Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010591.1-P | |
| Bra011740.1-P | |
| Bra030002.1-P | |
| Bra036071.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | Bra030002.1-P | AT3G50330.1 | 21798944 |
| AT3G50330.1 | Bra036071.1-P | AT3G50330.1 | 21798944 |
| AT3G50330.1 | Bra010591.1-P | AT4G36930.1 | 17855426 |
| AT3G50330.1 | Bra011740.1-P | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30593 | Canola | nucleus | 99.06 | 99.06 |
| CDY17765 | Canola | nucleus | 93.43 | 88.05 |
| Bra030002.1-P | Field mustard | nucleus | 87.79 | 81.3 |
| AT3G50330.1 | Thale cress | nucleus | 82.63 | 76.19 |
| Solyc12g088790.1.1 | Tomato | nucleus | 38.5 | 67.77 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 64.32 | 66.83 |
| Bra036801.1-P | Field mustard | nucleus | 68.54 | 63.2 |
| Bra012128.1-P | Field mustard | nucleus | 63.38 | 61.64 |
| PGSC0003DMT400048857 | Potato | nucleus | 39.44 | 56.76 |
| KRH28464 | Soybean | nucleus | 53.52 | 47.11 |
| PGSC0003DMT400010344 | Potato | nucleus | 46.95 | 44.64 |
| KRH77007 | Soybean | nucleus | 52.58 | 44.62 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 44.6 | 43.18 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 44.6 | 43.18 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 44.6 | 42.79 |
| KRH57944 | Soybean | nucleus | 50.23 | 42.13 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 43.66 | 42.08 |
| KRH04603 | Soybean | nucleus | 53.99 | 40.78 |
| Os09t0455300-01 | Rice | nucleus | 43.66 | 39.41 |
| Zm00001d050016_P001 | Maize | nucleus | 43.66 | 38.59 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 42.25 | 38.3 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 42.25 | 38.3 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 42.72 | 38.24 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 43.66 | 37.96 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 41.78 | 37.87 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 41.78 | 37.87 |
| Zm00001d020705_P001 | Maize | nucleus | 41.78 | 36.78 |
| Bra000979.1-P | Field mustard | cytosol | 31.92 | 36.76 |
| Zm00001d031781_P001 | Maize | nucleus | 42.72 | 36.26 |
| EES15124 | Sorghum | nucleus | 44.6 | 35.32 |
| Bra028620.1-P | Field mustard | nucleus | 35.21 | 35.05 |
| EER96848 | Sorghum | nucleus | 42.72 | 34.87 |
| Zm00001d005841_P001 | Maize | nucleus | 39.44 | 34.71 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 21.6 | 25.99 |
| Bra001826.1-P | Field mustard | nucleus | 33.8 | 22.22 |
| Bra031275.1-P | Field mustard | nucleus | 34.27 | 21.99 |
| Bra032846.1-P | Field mustard | nucleus | 20.66 | 18.03 |
| Bra030063.1-P | Field mustard | nucleus | 20.66 | 17.25 |
| Bra010921.1-P | Field mustard | nucleus | 20.66 | 17.19 |
| Bra019708.1-P | Field mustard | nucleus | 20.19 | 14.01 |
| Bra034587.1-P | Field mustard | nucleus | 21.13 | 13.01 |
| Bra036969.1-P | Field mustard | nucleus | 20.66 | 12.57 |
| Bra011476.1-P | Field mustard | nucleus | 20.19 | 12.39 |
| Bra004169.1-P | Field mustard | nucleus | 14.55 | 11.57 |
| Bra039819.1-P | Field mustard | nucleus | 18.31 | 11.27 |
Protein Annotations
| EnsemblPlants:Bra036071.1 | EnsemblPlants:Bra036071.1-P | EnsemblPlantsGene:Bra036071 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002542B71 | UniProt:M4F4R7 | MapMan:15.5.32 | : |
Description
AT3G50330 (E=1e-072) HEC2 | HEC2 (HECATE 2); DNA binding / transcription factor
Coordinates
chrA09:-:25073716..25074357
Molecular Weight (calculated)
23936.9 Da
IEP (calculated)
9.932
GRAVY (calculated)
-0.617
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSDILMNM MMTQMEKLPD HFSNPNLNPS SHNITMPSES NTYHPFFFNH NNHTHPPVLN PTITHHHQPG LNFRYAPSTS SFLPDKRGGG GDNADMAAMR
101: EMIFRIAVMQ PIHIDPESVK PPKRKNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQSLEEHAV VNGGGMTPAP
201: PVVGGKGCKD YAI
101: EMIFRIAVMQ PIHIDPESVK PPKRKNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQSLEEHAV VNGGGMTPAP
201: PVVGGKGCKD YAI
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.