Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37221 | Canola | nucleus | 97.4 | 97.4 |
| CDX81461 | Canola | nucleus | 96.82 | 96.82 |
| AT2G14760.3 | Thale cress | nucleus | 74.86 | 75.95 |
| Bra036969.1-P | Field mustard | nucleus | 58.67 | 58.0 |
| Bra034587.1-P | Field mustard | nucleus | 57.8 | 57.8 |
| Bra011476.1-P | Field mustard | nucleus | 57.51 | 57.35 |
| PGSC0003DMT400008370 | Potato | nucleus | 28.9 | 50.51 |
| Solyc10g049780.1.1 | Tomato | nucleus | 33.81 | 43.01 |
| Solyc10g049720.1.1 | Tomato | nucleus | 35.55 | 41.28 |
| PGSC0003DMT400089728 | Potato | nucleus | 36.13 | 40.98 |
| Bra032846.1-P | Field mustard | nucleus | 27.46 | 38.93 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 39.31 | 38.86 |
| Bra010921.1-P | Field mustard | nucleus | 28.03 | 37.89 |
| PGSC0003DMT400087143 | Potato | nucleus | 36.13 | 37.54 |
| Solyc01g107140.1.1 | Tomato | nucleus | 35.26 | 36.97 |
| Bra030063.1-P | Field mustard | nucleus | 26.59 | 36.08 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 32.95 | 36.08 |
| KRH35668 | Soybean | nucleus | 35.55 | 34.94 |
| KRH35669 | Soybean | nucleus | 36.13 | 34.92 |
| EER99632 | Sorghum | nucleus | 28.32 | 34.75 |
| KRG91108 | Soybean | nucleus | 35.26 | 34.56 |
| KRH15444 | Soybean | nucleus | 34.68 | 34.29 |
| KRG91107 | Soybean | nucleus | 35.26 | 34.08 |
| Zm00001d006733_P001 | Maize | nucleus | 28.03 | 33.92 |
| Os07t0588400-00 | Rice | nucleus | 28.9 | 33.9 |
| Zm00001d021988_P001 | Maize | nucleus | 28.32 | 33.22 |
| KRH05600 | Soybean | nucleus | 33.53 | 32.86 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 10.69 | 20.9 |
| Bra028620.1-P | Field mustard | nucleus | 12.43 | 20.09 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 11.56 | 19.51 |
| Bra019708.1-P | Field mustard | nucleus | 17.05 | 19.22 |
| Bra012128.1-P | Field mustard | nucleus | 11.85 | 18.72 |
| Bra000979.1-P | Field mustard | cytosol | 9.83 | 18.38 |
| Bra036071.1-P | Field mustard | nucleus | 11.27 | 18.31 |
| Bra036801.1-P | Field mustard | nucleus | 11.85 | 17.75 |
| Bra004169.1-P | Field mustard | nucleus | 13.29 | 17.16 |
| Bra030002.1-P | Field mustard | nucleus | 11.27 | 16.96 |
| Bra001826.1-P | Field mustard | nucleus | 13.87 | 14.81 |
| Bra031275.1-P | Field mustard | nucleus | 14.16 | 14.76 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra039819 | EnsemblPlants:Bra039819.1 | EnsemblPlants:Bra039819.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009555 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M4FFE6 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000253EAB0 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
AT2G14760 (E=4e-095) | basic helix-loop-helix protein / bHLH protein
Coordinates
chrScaffold000178:-:31808..33647
Molecular Weight (calculated)
38442.1 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.751
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPQ NAHLTGGFCF SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV
101: GEEMCECELA EYSAKSLLPL ETAEENQDDN KRSLETEDDQ KLFNACESSK KRTRAITTDK NKRASKTRKT KKIMEMSDNN NNSGGEVHTE KAGGERHTKA
201: LKIQKTCYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS RGAATDPQSL YARKISYVRL KTKTKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM
301: LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI
101: GEEMCECELA EYSAKSLLPL ETAEENQDDN KRSLETEDDQ KLFNACESSK KRTRAITTDK NKRASKTRKT KKIMEMSDNN NNSGGEVHTE KAGGERHTKA
201: LKIQKTCYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS RGAATDPQSL YARKISYVRL KTKTKTDLMT VQKRRERINE RLKILQNLVP NGTKVDISTM
301: LEEAVQYVKF LQLQIKLLSS DDLWMYAPIA YNGMDIGLDM KLNSLI
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARLKQLNKV HCMMVQKRRE RINERLRILQ HLVPNGTKVD ISTMLEEAVQ
301: YVKFLQLQIK LLSSDDLWMY APIAYNGMDI GLDLKLNALT R
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARLKQLNKV HCMMVQKRRE RINERLRILQ HLVPNGTKVD ISTMLEEAVQ
301: YVKFLQLQIK LLSSDDLWMY APIAYNGMDI GLDLKLNALT R
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.