Factsheet for VIT_03s0091g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09210.t01	Wine grape	nucleus	38.0	52.16
GSMUA_Achr2P17130_001	Banana	nucleus	40.57	44.94
Bra034587.1-P	Field mustard	nucleus	42.0	42.49
Bra036969.1-P	Field mustard	nucleus	41.43	41.43
CDY28328	Canola	nucleus	42.0	41.29
AT4G33880.1	Thale cress	nucleus	41.43	41.19
CDX72435	Canola	nucleus	41.14	41.14
KRH15444	Soybean	nucleus	41.14	41.14
CDY49379	Canola	nucleus	41.14	41.14
KRH05600	Soybean	nucleus	41.43	41.08
CDX69011	Canola	nucleus	40.57	40.92
Bra011476.1-P	Field mustard	nucleus	40.29	40.63
AT2G14760.3	Thale cress	nucleus	39.43	40.47
CDX75386	Canola	nucleus	40.0	40.35
EER99632	Sorghum	nucleus	32.0	39.72
CDX81461	Canola	nucleus	39.14	39.6
CDY37221	Canola	nucleus	38.86	39.31
Bra039819.1-P	Field mustard	nucleus	38.86	39.31
Os07t0588400-00	Rice	nucleus	32.86	38.98
Zm00001d006733_P001	Maize	nucleus	31.43	38.46
Zm00001d021988_P001	Maize	nucleus	32.29	38.31
CDY48431	Canola	nucleus	31.71	34.58
VIT_08s0058g00110.t01	Wine grape	plastid	11.43	24.84
VIT_04s0044g01040.t01	Wine grape	nucleus	13.71	21.52
VIT_18s0001g10400.t01	Wine grape	nucleus	14.86	20.97
VIT_14s0006g01470.t01	Wine grape	nucleus	20.57	20.75
VIT_07s0031g00550.t01	Wine grape	nucleus	14.57	20.24
VIT_09s0002g02700.t01	Wine grape	nucleus	18.86	14.01

Protein Annotations

EntrezGene:100254852	wikigene:100254852	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AM488045	ProteinID:CAN79863
ProteinID:CAN79863.1	ProteinID:CBI22462	ProteinID:CBI22462.3	UniProt:D7SXR2	EMBL:FN595242	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100254852	wikigene:LOC100254852
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF105	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0001BE1EF9	ArrayExpress:VIT_03s0091g00730	EnsemblPlantsGene:VIT_03s0091g00730	EnsemblPlants:VIT_03s0091g00730.t01	RefSeq:XP_002264083	RefSeq:XP_002264083.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:7192504..7193911

Molecular Weight (calculated)

37970.0 Da

IEP (calculated)

4.383

GRAVY (calculated)

-0.516

Length

350 amino acids

Sequence
(BLAST)

001: MEPVGAISEG EWGSLSGMYT TEEAEFMAQL LGNCSSFPNE LDGGSSLGIP SAFWAAGHES VNKSLYCSSD AANTNLYCFS QGSSSYSGGS SLFPNSSQGS
101: YYLSDSQQVL GGNNSAMSMD FCIGDDKNNS LAVQVFADSL MEGDEYCLNV EECRRNFPEM PELPSATEDK NNKMPENSKK RMRDSGDVSI KKKFFISSYG
201: GAYIFCSVSS NNEEDNNGGV VNGQSSSSCS SEDESIASQE LNGSSSPKGS AALNSKDKAR ASRGSATDPQ SLYARKRRER INERLKILQN LVPNGTKVDI
301: STMLEEAVEY VKFLQLQIKL LSSDDLWMYA PLAYNGMDIG LDLKISMPRK

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.