Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011476.1-P | Field mustard | nucleus | 94.81 | 94.81 |
| CDX75386 | Canola | nucleus | 94.52 | 94.52 |
| CDY49379 | Canola | nucleus | 87.61 | 86.86 |
| CDX72435 | Canola | nucleus | 87.61 | 86.86 |
| CDY28328 | Canola | nucleus | 83.86 | 81.74 |
| CDY48431 | Canola | nucleus | 72.33 | 78.19 |
| CDX81461 | Canola | nucleus | 59.65 | 59.83 |
| CDY37221 | Canola | nucleus | 58.79 | 58.96 |
| PGSC0003DMT400008370 | Potato | nucleus | 28.53 | 50.0 |
| Solyc10g049780.1.1 | Tomato | nucleus | 33.43 | 42.65 |
| CDX90106 | Canola | nucleus | 25.94 | 42.25 |
| Solyc10g049720.1.1 | Tomato | nucleus | 36.02 | 41.95 |
| PGSC0003DMT400089728 | Potato | nucleus | 36.6 | 41.64 |
| CDY15706 | Canola | nucleus | 25.07 | 41.04 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 40.92 | 40.57 |
| PGSC0003DMT400087143 | Potato | nucleus | 38.04 | 39.64 |
| Solyc01g107140.1.1 | Tomato | nucleus | 36.89 | 38.79 |
| CDY03948 | Canola | cytosol | 16.14 | 38.62 |
| CDX84906 | Canola | nucleus | 26.8 | 38.11 |
| CDY27630 | Canola | nucleus | 26.51 | 38.02 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 34.58 | 37.97 |
| CDY11768 | Canola | nucleus | 27.09 | 36.72 |
| KRG91108 | Soybean | nucleus | 36.89 | 36.26 |
| KRH35668 | Soybean | nucleus | 35.45 | 34.94 |
| KRH15444 | Soybean | nucleus | 35.16 | 34.86 |
| KRH35669 | Soybean | nucleus | 35.73 | 34.64 |
| CDY11802 | Canola | nucleus | 22.77 | 34.35 |
| KRH05600 | Soybean | nucleus | 34.58 | 33.99 |
| KRG91107 | Soybean | nucleus | 34.29 | 33.24 |
| CDX91916 | Canola | cytosol | 11.24 | 21.91 |
| CDY18636 | Canola | nucleus | 12.68 | 21.46 |
| CDX74329 | Canola | cytosol | 11.24 | 21.43 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 12.68 | 21.26 |
| CDX68049 | Canola | nucleus | 17.58 | 21.03 |
| CDY55674 | Canola | nucleus | 17.58 | 21.03 |
| CDX96145 | Canola | nucleus | 17.58 | 21.03 |
| CDY11694 | Canola | nucleus | 17.58 | 21.03 |
| CDX85799 | Canola | nucleus | 12.97 | 21.03 |
| CDY64847 | Canola | nucleus | 12.97 | 20.93 |
| CDY55900 | Canola | nucleus, plastid | 10.66 | 20.9 |
| CDY66929 | Canola | nucleus, plastid | 10.66 | 20.9 |
| CDY30593 | Canola | nucleus | 12.68 | 20.66 |
| CDY21597 | Canola | nucleus | 13.26 | 20.63 |
| CDY01443 | Canola | nucleus | 12.97 | 20.55 |
| CDY12799 | Canola | nucleus | 12.68 | 20.18 |
| CDX68583 | Canola | nucleus | 12.97 | 19.82 |
| CDY63952 | Canola | nucleus | 12.97 | 19.48 |
| CDY43559 | Canola | nucleus | 12.97 | 19.48 |
| CDY61813 | Canola | nucleus | 17.0 | 19.34 |
| CDY58387 | Canola | nucleus | 17.0 | 19.22 |
| CDX83121 | Canola | nucleus | 12.68 | 19.13 |
| CDY17765 | Canola | nucleus | 12.39 | 19.03 |
| CDY51449 | Canola | nucleus | 15.56 | 16.27 |
| CDY32423 | Canola | nucleus | 15.27 | 16.06 |
| CDY62045 | Canola | nucleus | 15.27 | 15.82 |
| CDY48884 | Canola | nucleus | 14.7 | 15.22 |
| CDY03946 | Canola | nucleus | 9.8 | 12.36 |
Protein Annotations
| EnsemblPlants:CDX69011 | EnsemblPlantsGene:GSBRNA2T00130766001 | Gene3D:4.10.280.10 | GO:A0A078BW45 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX69011 | ProteinID:CDX69011.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDC1F8 | MapMan:15.5.32 | : |
Description
BnaC01g04420D
Coordinates
chrLK031789:-:2444086..2445665
Molecular Weight (calculated)
38314.2 Da
IEP (calculated)
4.983
GRAVY (calculated)
-0.856
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTAGGDQQG LYWSLGSNHN HLTVMPEASS FGFSGESSSY SVGNRGYYAA VPPAVEENNH
101: GSMGFRMEDV TINTNSYLVG EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DHHRSLTGSK KRSRATSTDK NKRSKVGKRG QKGIEMTCDN
201: NNRGEEEEGE KVKRRKSGAM MSRQNSSTTF CSEEESQCPS QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV
301: DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR
101: GSMGFRMEDV TINTNSYLVG EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DHHRSLTGSK KRSRATSTDK NKRSKVGKRG QKGIEMTCDN
201: NNRGEEEEGE KVKRRKSGAM MSRQNSSTTF CSEEESQCPS QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV
301: DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR
001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
Arabidopsis Description
BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.