Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18636 | Canola | nucleus | 95.65 | 96.59 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 95.17 | 96.1 |
| CDY01443 | Canola | nucleus | 82.61 | 78.08 |
| CDY12799 | Canola | nucleus | 82.13 | 77.98 |
| CDY43559 | Canola | nucleus | 86.47 | 77.49 |
| CDY63952 | Canola | nucleus | 85.99 | 77.06 |
| AT5G67060.1 | Thale cress | nucleus | 84.06 | 72.2 |
| Solyc12g088790.1.1 | Tomato | nucleus | 40.58 | 69.42 |
| CDX68583 | Canola | nucleus | 72.46 | 66.08 |
| CDX83121 | Canola | nucleus | 72.46 | 65.22 |
| CDY17765 | Canola | nucleus | 70.53 | 64.6 |
| CDY30593 | Canola | nucleus | 65.22 | 63.38 |
| PGSC0003DMT400048857 | Potato | nucleus | 39.13 | 54.73 |
| PGSC0003DMT400010344 | Potato | nucleus | 48.79 | 45.09 |
| KRH28464 | Soybean | nucleus | 52.66 | 45.04 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 45.89 | 43.18 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 45.89 | 42.79 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 45.41 | 42.73 |
| KRH77007 | Soybean | nucleus | 51.69 | 42.63 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 44.93 | 42.08 |
| KRH57944 | Soybean | nucleus | 48.79 | 39.76 |
| Os09t0455300-01 | Rice | nucleus | 44.93 | 39.41 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 44.44 | 39.15 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 44.44 | 39.15 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 44.93 | 39.08 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 43.96 | 38.72 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 43.96 | 38.72 |
| Zm00001d050016_P001 | Maize | nucleus | 44.44 | 38.17 |
| KRH04603 | Soybean | nucleus | 51.69 | 37.94 |
| CDX91916 | Canola | cytosol | 32.37 | 37.64 |
| Zm00001d020705_P001 | Maize | nucleus | 43.96 | 37.6 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 43.48 | 36.73 |
| CDX85799 | Canola | nucleus | 37.2 | 35.98 |
| CDY64847 | Canola | nucleus | 37.2 | 35.81 |
| CDX74329 | Canola | cytosol | 31.4 | 35.71 |
| EER96848 | Sorghum | nucleus | 44.93 | 35.63 |
| Zm00001d005841_P001 | Maize | nucleus | 41.55 | 35.54 |
| Zm00001d031781_P001 | Maize | nucleus | 43.0 | 35.46 |
| EES15124 | Sorghum | nucleus | 45.89 | 35.32 |
| CDY21597 | Canola | nucleus | 36.23 | 33.63 |
| CDY55900 | Canola | nucleus, plastid | 22.71 | 26.55 |
| CDY66929 | Canola | nucleus, plastid | 22.71 | 26.55 |
| CDY51449 | Canola | nucleus | 33.33 | 20.78 |
| CDY62045 | Canola | nucleus | 33.33 | 20.6 |
| CDY32423 | Canola | nucleus | 32.37 | 20.3 |
| CDY48884 | Canola | nucleus | 31.4 | 19.4 |
| CDY15706 | Canola | nucleus | 19.81 | 19.34 |
| CDX90106 | Canola | nucleus | 19.32 | 18.78 |
| CDY03948 | Canola | cytosol | 12.56 | 17.93 |
| CDY27630 | Canola | nucleus | 20.77 | 17.77 |
| CDX84906 | Canola | nucleus | 20.77 | 17.62 |
| CDY11802 | Canola | nucleus | 17.87 | 16.09 |
| CDY11768 | Canola | nucleus | 19.81 | 16.02 |
| CDY55674 | Canola | nucleus | 21.26 | 15.17 |
| CDY11694 | Canola | nucleus | 20.77 | 14.83 |
| CDX96145 | Canola | nucleus | 20.77 | 14.83 |
| CDX68049 | Canola | nucleus | 20.77 | 14.83 |
| CDY61813 | Canola | nucleus | 20.77 | 14.1 |
| CDY58387 | Canola | nucleus | 20.77 | 14.01 |
| CDY28328 | Canola | nucleus | 23.67 | 13.76 |
| CDX75386 | Canola | nucleus | 21.26 | 12.68 |
| CDX69011 | Canola | nucleus | 21.26 | 12.68 |
| CDX72435 | Canola | nucleus | 21.26 | 12.57 |
| CDY49379 | Canola | nucleus | 21.26 | 12.57 |
| CDY48431 | Canola | nucleus | 18.36 | 11.84 |
| CDX81461 | Canola | nucleus | 19.32 | 11.56 |
| CDY37221 | Canola | nucleus | 19.32 | 11.56 |
| CDY03946 | Canola | nucleus | 6.28 | 4.73 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CX43 | EnsemblPlants:CDX81342 | ProteinID:CDX81342 | ProteinID:CDX81342.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00134891001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE4DD6 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC09g07530D
Coordinates
chrLK031824:-:1099158..1099781
Molecular Weight (calculated)
23475.3 Da
IEP (calculated)
9.708
GRAVY (calculated)
-0.567
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDIMNIMM QHMENLPEFY NTNPSLIDHT NNTYPFLFNS NHNHSDSMTH EPGFRYGAGL HASPAYSSIL HDKRHNISNT DNTNMAAMRE MIFRIAMMQP
101: IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV NGGGVAMKGC GAMGTTHQMV
201: GNAHILR
101: IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV NGGGVAMKGC GAMGTTHQMV
201: GNAHILR
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.