Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43559 | Canola | nucleus | 85.06 | 88.74 |
| CDY63952 | Canola | nucleus | 84.65 | 88.31 |
| Bra036801.1-P | Field mustard | nucleus | 84.65 | 88.31 |
| CDY18636 | Canola | nucleus | 72.2 | 84.88 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 72.2 | 84.88 |
| CDY01443 | Canola | nucleus | 76.76 | 84.47 |
| Bra012128.1-P | Field mustard | nucleus | 76.76 | 84.47 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 72.2 | 84.06 |
| CDY12799 | Canola | nucleus | 75.93 | 83.94 |
| Solyc12g088790.1.1 | Tomato | nucleus | 35.27 | 70.25 |
| AT3G50330.1 | Thale cress | nucleus | 66.81 | 69.7 |
| PGSC0003DMT400048857 | Potato | nucleus | 34.02 | 55.41 |
| KRH28464 | Soybean | nucleus | 48.13 | 47.93 |
| PGSC0003DMT400010344 | Potato | nucleus | 43.57 | 46.88 |
| KRH77007 | Soybean | nucleus | 48.13 | 46.22 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 40.66 | 44.55 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 40.66 | 44.14 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 40.25 | 44.09 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 39.83 | 43.44 |
| KRH57944 | Soybean | nucleus | 44.81 | 42.52 |
| Os09t0455300-01 | Rice | nucleus | 40.66 | 41.53 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 40.25 | 41.28 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 40.25 | 41.28 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 40.66 | 41.18 |
| KRH04603 | Soybean | nucleus | 48.13 | 41.13 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 39.42 | 40.43 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 39.42 | 40.43 |
| Zm00001d050016_P001 | Maize | nucleus | 39.83 | 39.83 |
| Zm00001d020705_P001 | Maize | nucleus | 39.42 | 39.26 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 39.42 | 38.78 |
| Zm00001d031781_P001 | Maize | nucleus | 39.0 | 37.45 |
| EES15124 | Sorghum | nucleus | 41.49 | 37.17 |
| EER96848 | Sorghum | nucleus | 39.83 | 36.78 |
| AT4G00120.1 | Thale cress | nucleus | 29.88 | 36.36 |
| Zm00001d005841_P001 | Maize | nucleus | 36.1 | 35.95 |
| AT5G09750.1 | Thale cress | nucleus | 31.54 | 33.93 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 19.5 | 27.49 |
| AT5G43175.1 | Thale cress | nucleus | 18.26 | 19.73 |
| AT3G21330.1 | Thale cress | nucleus | 29.46 | 19.03 |
| AT1G27740.1 | Thale cress | nucleus | 17.01 | 15.89 |
| AT1G66470.1 | Thale cress | nucleus | 18.26 | 14.77 |
| AT5G37800.1 | Thale cress | nucleus | 17.84 | 14.01 |
| AT4G33880.1 | Thale cress | nucleus | 19.09 | 13.07 |
| AT2G14760.3 | Thale cress | nucleus | 17.01 | 12.02 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:836841 | UniProt:A0A178UR10 | ProteinID:AED98296.1 | EMBL:AF488618 |
| EMBL:AK228927 | ArrayExpress:AT5G67060 | EnsemblPlantsGene:AT5G67060 | RefSeq:AT5G67060 | TAIR:AT5G67060 | RefSeq:AT5G67060-TAIR-G |
| EnsemblPlants:AT5G67060.1 | TAIR:AT5G67060.1 | Unigene:At.28829 | ProteinID:BAB10940.1 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010500 | GO:GO:0043565 |
| GO:GO:0045893 | GO:GO:0046983 | GO:GO:0048462 | Symbol:HEC1 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_201507.1 | ProteinID:OAO96105.1 | PFAM:PF00010 | PO:PO:0000030 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0007606 | PO:PO:0007611 | PO:PO:0007615 | PO:PO:0007616 | PO:PO:0009010 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0009073 | PO:PO:0020003 | PO:PO:0020102 |
| PO:PO:0025022 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | UniProt:Q9FHA7 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00000A3AEC | InterPro:bHLH_dom | SEG:seg | : | : |
Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
Coordinates
chr5:+:26766082..26767257
Molecular Weight (calculated)
26231.5 Da
IEP (calculated)
10.077
GRAVY (calculated)
-0.485
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.