Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 16.59 | 61.67 |
| AT1G27740.1 | Thale cress | nucleus | 67.26 | 58.14 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 32.29 | 49.32 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 30.04 | 36.02 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 30.04 | 36.02 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 29.6 | 35.48 |
| OQU83893 | Sorghum | nucleus | 33.63 | 30.99 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 31.84 | 27.95 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 29.15 | 27.9 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 30.94 | 27.17 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 34.53 | 26.83 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 33.18 | 26.81 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 30.49 | 26.67 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 32.29 | 26.18 |
| EER93400 | Sorghum | nucleus | 34.08 | 26.03 |
| AT4G33880.1 | Thale cress | nucleus | 39.46 | 25.0 |
| AT2G14760.3 | Thale cress | nucleus | 37.22 | 24.34 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 31.39 | 24.22 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 31.39 | 23.97 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 31.39 | 23.33 |
| Os11t0634700-00 | Rice | extracellular | 35.43 | 22.01 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 15.7 | 20.47 |
| AT5G09750.1 | Thale cress | nucleus | 19.73 | 19.64 |
| AT5G67060.1 | Thale cress | nucleus | 19.73 | 18.26 |
| AT3G50330.1 | Thale cress | nucleus | 18.83 | 18.18 |
| AT4G00120.1 | Thale cress | nucleus | 15.7 | 17.68 |
| AT1G66470.1 | Thale cress | nucleus | 23.32 | 17.45 |
| AT5G37800.1 | Thale cress | nucleus | 23.77 | 17.26 |
| AT3G21330.1 | Thale cress | nucleus | 16.59 | 9.92 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 10.76 | 7.12 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:834335 | EMBL:AB008267 | ProteinID:AED94919.1 | ArrayExpress:AT5G43175 |
| EnsemblPlantsGene:AT5G43175 | RefSeq:AT5G43175 | TAIR:AT5G43175 | RefSeq:AT5G43175-TAIR-G | EnsemblPlants:AT5G43175.1 | TAIR:AT5G43175.1 |
| Unigene:At.55333 | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_680385.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF105 | UniProt:Q3E7L7 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000162808 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BHLH139Transcription factor bHLH139 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7L7]
Coordinates
chr5:+:17334121..17335234
Molecular Weight (calculated)
25077.5 Da
IEP (calculated)
7.059
GRAVY (calculated)
-0.603
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNETDVF SSDDFFPFGT ILQSNYAAVL DGSNHQTNRN VDSRQDLLKP RKKQKLSSES NLVTEPKTAW
101: RDGQSLSSYN SSDDEKALGL VSNTSKSLKR KAKANRGIAS DPQSLYARKR RERINDRLKT LQSLVPNGTK VDISTMLEDA VHYVKFLQLQ IKLLSSEDLW
201: MYAPLAHNGL NMGLHHNLLS RLI
101: RDGQSLSSYN SSDDEKALGL VSNTSKSLKR KAKANRGIAS DPQSLYARKR RERINDRLKT LQSLVPNGTK VDISTMLEDA VHYVKFLQLQ IKLLSSEDLW
201: MYAPLAHNGL NMGLHHNLLS RLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.