Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16890_001 | Banana | nucleus | 30.31 | 63.97 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 25.78 | 50.68 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 29.97 | 46.24 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 28.22 | 43.55 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 28.22 | 43.55 |
| CDY03948 | Canola | cytosol | 19.86 | 39.31 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 43.21 | 39.24 |
| CDX90106 | Canola | nucleus | 28.92 | 38.97 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 16.38 | 38.84 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 34.15 | 38.43 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 33.8 | 38.19 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 33.8 | 38.19 |
| GSMUA_Achr3P18870_001 | Banana | nucleus | 45.64 | 37.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.37 | 37.79 |
| OQU83893 | Sorghum | nucleus | 31.71 | 37.6 |
| CDY15706 | Canola | nucleus | 27.18 | 36.79 |
| CDX84906 | Canola | nucleus | 29.62 | 34.84 |
| CDY27630 | Canola | nucleus | 29.27 | 34.71 |
| AT5G43175.1 | Thale cress | nucleus | 26.83 | 34.53 |
| AT1G27740.1 | Thale cress | nucleus | 31.01 | 34.5 |
| Bra032846.1-P | Field mustard | nucleus | 29.27 | 34.43 |
| CDY11768 | Canola | nucleus | 30.66 | 34.38 |
| Bra010921.1-P | Field mustard | nucleus | 30.31 | 33.98 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 27.53 | 33.91 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 31.71 | 32.97 |
| Bra030063.1-P | Field mustard | nucleus | 28.57 | 32.16 |
| CDY11802 | Canola | nucleus | 25.09 | 31.3 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 12.54 | 29.51 |
| Os11t0634700-00 | Rice | extracellular | 32.4 | 25.91 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 13.24 | 24.52 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 14.29 | 24.4 |
| GSMUA_Achr11P... | Banana | nucleus | 14.98 | 22.51 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 12.89 | 22.16 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 14.63 | 21.21 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 14.63 | 20.49 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 10.8 | 20.26 |
| GSMUA_Achr10P... | Banana | nucleus | 20.91 | 20.13 |
| GSMUA_Achr10P... | Banana | nucleus | 16.03 | 19.01 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 21.25 | 18.94 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 21.95 | 18.58 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 14.63 | 17.14 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 19.86 | 16.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.63 | 15.38 |
| GSMUA_Achr8P24970_001 | Banana | nucleus | 16.03 | 13.22 |
| CDY03946 | Canola | nucleus | 9.41 | 9.82 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 11.15 | 9.5 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P07760_001 | EnsemblPlants:GSMUA_Achr6T07760_001 | EnsemblPlantsGene:GSMUA_Achr6G07760_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000296F766 | UniProt:M0T525 | MapMan:15.5.32 | : | : |
Description
Putative helix-loop-helix DNA-binding domain containing protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G07760_001]
Coordinates
chr6:-:5250623..5251715
Molecular Weight (calculated)
31405.2 Da
IEP (calculated)
4.301
GRAVY (calculated)
-0.659
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEGMASEL NWSSFDPSFS VEETEEAMAQ LFGSQHMFWS DSDYDGCYSS NPDMAVTSTP MNSSVGGEGN AAPWFPLGAY DQHDRPISVN EETSRDELAD
101: AVVKPLPPPP PPPPADASQG TKRRLRGGDI QIEVSRKKWK KAQNSAATAD EEDSSADINP RSSYCYGSED DSNGSRELKG AVSMSSSSKG SAALNPNPQS
201: LYAKKRRERI NERLRILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDEMWMYAP IAYNGVSLGF DLKDPSIVSA EENDSGI
101: AVVKPLPPPP PPPPADASQG TKRRLRGGDI QIEVSRKKWK KAQNSAATAD EEDSSADINP RSSYCYGSED DSNGSRELKG AVSMSSSSKG SAALNPNPQS
201: LYAKKRRERI NERLRILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDEMWMYAP IAYNGVSLGF DLKDPSIVSA EENDSGI
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.