CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048786_P001	Maize	nucleus, plastid	71.49	74.25
TraesCS3B01G474700.1	Wheat	nucleus	42.98	40.94
TraesCS3A01G440600.1	Wheat	nucleus	42.98	40.94
TraesCS3D01G433200.1	Wheat	nucleus	42.56	40.39
CDY03948	Canola	cytosol	21.9	36.55
CDX90106	Canola	nucleus	30.58	34.74
AT5G43175.1	Thale cress	nucleus	30.99	33.63
CDY15706	Canola	nucleus	29.34	33.49
GSMUA_Achr6P07760_001	Banana	nucleus	37.6	31.71
CDY27630	Canola	nucleus	31.41	31.41
CDX84906	Canola	nucleus	31.41	31.15
Bra032846.1-P	Field mustard	nucleus	31.41	31.15
AT1G27740.1	Thale cress	nucleus	33.06	31.01
Bra010921.1-P	Field mustard	nucleus	32.64	30.86
CDY11768	Canola	nucleus	32.64	30.86
EER93400	Sorghum	nucleus	36.78	30.48
Bra030063.1-P	Field mustard	nucleus	31.82	30.2
EER91225	Sorghum	nucleus	36.78	29.67
CDY11802	Canola	nucleus	27.69	29.13
EER99632	Sorghum	nucleus	33.88	29.08
EES17296	Sorghum	nucleus	36.78	28.16
Os11t0634700-00	Rice	extracellular	41.74	28.13
KXG39918	Sorghum	nucleus	36.36	27.33
EES00435	Sorghum	nucleus	21.49	17.93
EES07381	Sorghum	nucleus	21.49	16.99
EER96848	Sorghum	nucleus	17.77	16.48
EES15124	Sorghum	nucleus	17.36	15.61
OQU87789	Sorghum	cytosol	6.61	11.19
EES18589	Sorghum	nucleus	17.77	10.72
KXG33221	Sorghum	nucleus	17.77	10.29
EES14382	Sorghum	nucleus	14.46	10.06
CDY03946	Canola	nucleus	9.5	8.36
OQU87026	Sorghum	nucleus	14.46	7.59

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8068325	UniProt:A0A1Z5RJE9	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:OQU83893
ProteinID:OQU83893	ProteinID:OQU83893.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF99
SMART:SM00353	EnsemblPlantsGene:SORBI_3005G195400	SUPFAM:SSF47459	UniParc:UPI0001A8659B	RefSeq:XP_002449894.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:67964508..67967387

Molecular Weight (calculated)

27079.7 Da

IEP (calculated)

4.993

GRAVY (calculated)

-0.509

Length

242 amino acids

Sequence
(BLAST)

001: MEANSASIWS EESEMIAHLQ SMFWSSSNAD SCLSSPNSST SSCVENEPFD KEQCLDTGAV WCFDHQSQVF APITNEVTGI KRVCLMDENK KSKNAKKLRT
101: IALVSRTSSN APADEINTEL VSQSCSWSCS SEDDSIGVCE ESVVLKQSTS SRGRSRSSKD LQSLYAKRRR ERINERLRTL QQLIPNGTKV DMSTMLEEAV
201: QYVKFLQLQI KLLSSEDTWM YAPLAYNHMS MDVSQNAAVN QS

Best Arabidopsis Sequence Match ( AT1G27740.1 )
(BLAST)

001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM

Arabidopsis Description

BHLH54Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.