Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | EES09081 | AT2G38270.1 | 21798944 |
| AT4G00120.1 | EES16486 | AT2G38270.1 | 21798944 |
| AT5G09750.1 | KXG31309 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | OQU75890 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035027_P001 | Maize | nucleus | 90.23 | 93.73 |
| Zm00001d049721_P001 | Maize | nucleus | 69.83 | 84.67 |
| Os08t0108500-01 | Rice | nucleus | 70.4 | 80.07 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 26.72 | 76.23 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 67.53 | 75.08 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 67.53 | 74.13 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 67.82 | 73.52 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 36.78 | 64.65 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 60.34 | 61.95 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 29.89 | 61.9 |
| GSMUA_Achr11P... | Banana | nucleus | 33.33 | 60.73 |
| CDX85799 | Canola | nucleus | 34.48 | 56.07 |
| Bra028620.1-P | Field mustard | nucleus | 34.48 | 56.07 |
| CDY64847 | Canola | nucleus | 34.48 | 55.81 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 34.48 | 53.81 |
| AT5G09750.1 | Thale cress | nucleus | 34.48 | 53.57 |
| CDY21597 | Canola | nucleus | 33.33 | 52.02 |
| CDX91916 | Canola | cytosol | 23.28 | 45.51 |
| KRH43543 | Soybean | nucleus | 35.06 | 45.02 |
| KRH53884 | Soybean | nucleus | 30.17 | 44.87 |
| KRH59559 | Soybean | nucleus | 34.2 | 44.74 |
| CDX74329 | Canola | cytosol | 23.28 | 44.51 |
| Bra000979.1-P | Field mustard | cytosol | 23.28 | 43.78 |
| KRH64060 | Soybean | nucleus | 30.46 | 43.62 |
| AT4G00120.1 | Thale cress | nucleus | 23.85 | 41.92 |
| PGSC0003DMT400073760 | Potato | nucleus | 29.89 | 39.69 |
| Solyc11g005780.1.1 | Tomato | nucleus | 29.6 | 36.4 |
| EER96848 | Sorghum | nucleus | 23.85 | 31.8 |
| EES15124 | Sorghum | nucleus | 23.56 | 30.48 |
| EES18589 | Sorghum | nucleus | 21.55 | 18.7 |
| KXG33221 | Sorghum | nucleus | 20.69 | 17.22 |
| KXG39918 | Sorghum | nucleus | 14.66 | 15.84 |
| EER93400 | Sorghum | nucleus | 12.93 | 15.41 |
| EER99632 | Sorghum | nucleus | 12.07 | 14.89 |
| OQU87789 | Sorghum | cytosol | 6.03 | 14.69 |
| OQU83893 | Sorghum | nucleus | 10.06 | 14.46 |
| EES17296 | Sorghum | nucleus | 12.64 | 13.92 |
| EES00435 | Sorghum | nucleus | 11.49 | 13.79 |
| EES07381 | Sorghum | nucleus | 12.07 | 13.73 |
| EER91225 | Sorghum | nucleus | 11.49 | 13.33 |
| OQU87026 | Sorghum | nucleus | 17.24 | 13.02 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:8068530 | UniProt:C5YLU6 | ncoils:Coil | EnsemblPlants:EES14382 |
| ProteinID:EES14382 | ProteinID:EES14382.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | ProteinID:OQU79767.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF294 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3007G008500 | SUPFAM:SSF47459 | UniParc:UPI0001A87900 |
| RefSeq:XP_002444887.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:759321..763460
Molecular Weight (calculated)
37413.5 Da
IEP (calculated)
7.051
GRAVY (calculated)
-0.859
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHHPNPGPPP PPPLPFHLSS SHPAHHHPPP HPAHHHHHHP GLDPSPSSSL FPQPHHHHHH HRLHHLGLDL
101: DPASHSHGHH RHHEFGEQQE PGGGGGGGGG EEHQEEMRQQ QQHEAGGGGQ EDRGGGGAAE DVEEELGAMK EMMYRIAAMQ PVDIDPATIK KPRRRNVRIS
201: EDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQELQHQPS PTQQQYPASA GAGPSTSVVG VAAPGRPGGG PPFLPLGPGP
301: LIDWAGLVRP VDIHGPTSSS SSSSMGGAHA ALGFGFSSAG GQSSHGMH
101: DPASHSHGHH RHHEFGEQQE PGGGGGGGGG EEHQEEMRQQ QQHEAGGGGQ EDRGGGGAAE DVEEELGAMK EMMYRIAAMQ PVDIDPATIK KPRRRNVRIS
201: EDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQELQHQPS PTQQQYPASA GAGPSTSVVG VAAPGRPGGG PPFLPLGPGP
301: LIDWAGLVRP VDIHGPTSSS SSSSMGGAHA ALGFGFSSAG GQSSHGMH
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.