Factsheet for TraesCS7D01G319600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G154700.1
TraesCS5B01G152900.1
TraesCS5D01G159600.1
TraesCS6A01G190600.1
TraesCS6A01G373500.2
TraesCS6B01G411300.1
TraesCS6D01G357700.1
TraesCS7A01G126900.1
TraesCS7B01G026300.1
TraesCS7D01G124700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00120.1	TraesCS5A01G154700.1	AT2G38270.1	21798944
AT4G00120.1	TraesCS5B01G152900.1	AT2G38270.1	21798944
AT4G00120.1	TraesCS5D01G159600.1	AT2G38270.1	21798944
AT5G09750.1	TraesCS6A01G190600.1	AT4G36930.1	17855426
AT5G09750.1	TraesCS6A01G373500.2	AT4G36930.1	17855426
AT5G09750.1	TraesCS6B01G411300.1	AT4G36930.1	17855426
AT5G09750.1	TraesCS6D01G357700.1	AT4G36930.1	17855426
AT5G09750.1	TraesCS7A01G126900.1	AT4G36930.1	17855426
AT5G09750.1	TraesCS7B01G026300.1	AT4G36930.1	17855426
AT5G09750.1	TraesCS7D01G124700.1	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G323000.1	Wheat	nucleus	96.85	98.08
TraesCS7B01G223900.1	Wheat	nucleus	98.74	97.51
HORVU7Hr1G077270.3	Barley	cytosol	85.8	80.24
GSMUA_Achr6P18580_001	Banana	cytosol	29.34	76.23
Zm00001d049721_P001	Maize	nucleus	65.3	72.13
Os08t0108500-01	Rice	nucleus	69.09	71.57
Zm00001d035027_P001	Maize	nucleus	74.13	70.15
EES14382	Sorghum	nucleus	74.13	67.53
GSMUA_Achr5P01290_001	Banana	nucleus	39.43	63.13
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	33.12	62.5
GSMUA_Achr11P...	Banana	nucleus	36.91	61.26
VIT_04s0044g01040.t01	Wine grape	nucleus	38.17	54.26
Bra028620.1-P	Field mustard	nucleus	35.33	52.34
CDX85799	Canola	nucleus	35.33	52.34
CDY64847	Canola	nucleus	35.33	52.09
AT5G09750.1	Thale cress	nucleus	34.7	49.11
CDY21597	Canola	nucleus	34.38	48.88
KRH59559	Soybean	nucleus	38.49	45.86
KRH43543	Soybean	nucleus	39.12	45.76
CDX91916	Canola	cytosol	24.92	44.38
KRH53884	Soybean	nucleus	32.18	43.59
KRH64060	Soybean	nucleus	32.81	42.8
AT4G00120.1	Thale cress	nucleus	26.5	42.42
CDX74329	Canola	cytosol	24.29	42.31
Bra000979.1-P	Field mustard	cytosol	24.29	41.62
PGSC0003DMT400073760	Potato	nucleus	32.49	39.31
TraesCS7D01G263400.1	Wheat	nucleus	26.18	37.73
Solyc11g005780.1.1	Tomato	nucleus	32.18	36.04
TraesCS5D01G244000.1	Wheat	nucleus	24.29	32.77
TraesCS7D01G170900.1	Wheat	nucleus	18.3	31.35
TraesCS3D01G344600.1	Wheat	nucleus	16.09	23.94
TraesCS3D01G252700.1	Wheat	nucleus	22.08	18.13
TraesCS1D01G347900.1	Wheat	nucleus	10.09	17.2
TraesCS1D01G367700.1	Wheat	nucleus	21.14	16.71
TraesCS3D01G433200.1	Wheat	nucleus	12.93	16.08
TraesCS5D01G078800.1	Wheat	nucleus	13.56	14.88
TraesCS3D01G208500.2	Wheat	mitochondrion	22.08	14.77
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	12.62	14.55
TraesCS5D01G411600.1	Wheat	nucleus	13.56	14.33
TraesCS4D01G079500.1	Wheat	nucleus	13.25	13.42
TraesCS6D01G256600.1	Wheat	nucleus	11.99	13.15
TraesCS6D01G256400.1	Wheat	nucleus	11.36	13.09
TraesCS7D01G230600.1	Wheat	nucleus	11.67	12.94
TraesCS2D01G193700.1	Wheat	nucleus	12.3	12.91
TraesCS4D01G257100.1	Wheat	nucleus	13.25	12.69
TraesCS6D01G256300.1	Wheat	nucleus	11.67	12.59
TraesCS6D01G256500.1	Wheat	cytosol	11.04	12.37

Protein Annotations

EnsemblPlants:TraesCS7D01G319600.1	EnsemblPlantsGene:TraesCS7D01G319600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF294	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr7D:+:409163015..409163968

Molecular Weight (calculated)

34976.0 Da

IEP (calculated)

7.069

GRAVY (calculated)

-0.848

Length

317 amino acids

Sequence
(BLAST)

001: MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD HPTPTPPAPP PPPLSFHLHP PPPPPPHQHH QHHQQHQLAI DPSPSSSLFP PPHHHPHHLH HLDLAVDPHR
101: HHHDYQREQH PDEMQQRPPP AMEEGSQQLH HQDAVDEAEE ELGAMKEMMY RIAAMQPVDI DPATIKKPRR RNVRISEDPQ SVAARHRRER ISERIRILQR
201: LVPGGTKMDT ASMLDEAIRY IKFLKRQVQD LQHQPAPPQQ QHYPGGGGSG GAGPSSTAAV AGRPAFLPLG AGSLIDWAGL TRQVDIHAPT SSSSSSSMGG
301: ALGFGFSTGG QSSHGMH

Best Arabidopsis Sequence Match ( AT5G09750.1 )
(BLAST)

001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI

Arabidopsis Description

HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.