Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | KRH65709 | AT2G38270.1 | 21798944 |
| AT4G00120.1 | KRH75953 | AT2G38270.1 | 21798944 |
| AT4G00120.1 | KRH44613 | AT3G21150.1 | 21798944 |
| AT4G00120.1 | KRH47291 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64060 | Soybean | nucleus | 81.2 | 78.19 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 34.19 | 65.57 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 36.32 | 50.6 |
| GSMUA_Achr11P... | Banana | nucleus | 41.03 | 50.26 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 47.44 | 49.78 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 40.6 | 47.98 |
| CDX91916 | Canola | cytosol | 33.76 | 44.38 |
| PGSC0003DMT400073760 | Potato | nucleus | 49.15 | 43.89 |
| KRH52087 | Soybean | cytosol, mitochondrion, nucleus | 17.09 | 43.01 |
| CDX74329 | Canola | cytosol | 33.33 | 42.86 |
| Bra000979.1-P | Field mustard | cytosol | 33.33 | 42.16 |
| KRH59559 | Soybean | nucleus | 47.44 | 41.73 |
| KRH43543 | Soybean | nucleus | 48.29 | 41.7 |
| Solyc11g005780.1.1 | Tomato | nucleus | 50.0 | 41.34 |
| AT4G00120.1 | Thale cress | nucleus | 34.62 | 40.91 |
| KRH28464 | Soybean | nucleus | 37.18 | 35.95 |
| KRH77007 | Soybean | nucleus | 37.18 | 34.66 |
| Zm00001d049721_P001 | Maize | nucleus | 41.45 | 33.8 |
| Os08t0108500-01 | Rice | nucleus | 43.16 | 33.01 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 44.02 | 32.91 |
| KRH61303 | Soybean | nucleus | 36.32 | 32.2 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 43.59 | 32.18 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 44.02 | 32.09 |
| KRH57944 | Soybean | nucleus | 34.62 | 31.89 |
| KRH52010 | Soybean | nucleus | 34.62 | 31.4 |
| Zm00001d035027_P001 | Maize | nucleus | 44.44 | 31.04 |
| KRH04603 | Soybean | nucleus | 36.75 | 30.5 |
| EES14382 | Sorghum | nucleus | 44.87 | 30.17 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 43.16 | 29.79 |
| KRH75991 | Soybean | nucleus, plastid | 22.22 | 29.21 |
| KRH65648 | Soybean | nucleus, plastid | 22.65 | 29.12 |
| KRH00301 | Soybean | nucleus, plastid | 20.09 | 26.7 |
| KRH49427 | Soybean | nucleus, plastid | 18.8 | 25.0 |
| KRH47179 | Soybean | nucleus | 31.62 | 17.17 |
| KRH44227 | Soybean | nucleus | 31.2 | 16.48 |
| KRH09982 | Soybean | nucleus | 30.34 | 15.96 |
| KRH23349 | Soybean | nucleus | 30.34 | 15.78 |
| KRH35668 | Soybean | nucleus | 21.79 | 14.49 |
| KRG91108 | Soybean | nucleus | 21.79 | 14.45 |
| KRH15444 | Soybean | nucleus | 21.37 | 14.29 |
| KRH35669 | Soybean | nucleus | 21.79 | 14.25 |
| KRH05600 | Soybean | nucleus | 21.37 | 14.16 |
| KRG91107 | Soybean | nucleus | 20.94 | 13.69 |
| KRH15121 | Soybean | nucleus | 17.09 | 13.65 |
| KRH73015 | Soybean | nucleus | 16.67 | 13.22 |
| KRH30960 | Soybean | nucleus | 18.38 | 12.68 |
| KRH61404 | Soybean | nucleus | 17.95 | 12.65 |
| KRG97923 | Soybean | nucleus | 17.52 | 12.09 |
Protein Annotations
| EntrezGene:100803688 | MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A0R0JHC2 | EMBL:ACUP02003487 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_06G152300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH53884 | ProteinID:KRH53884 | ProteinID:KRH53884.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00023381B6 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:12409378..12410810
Molecular Weight (calculated)
26458.2 Da
IEP (calculated)
6.359
GRAVY (calculated)
-0.612
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTNQNITTT GNHENMGRDE HNNIILHDHH HHNQIPTPHY NHHPLHIVQP SSNVAPSFVS DVLGVVHFEE EDEDEEEVEE ELGAMKEMMY KMAVMQPVDI
101: DPASVRKPKR RNVRISDDPQ SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLDEAILY VKFLKRQIRL LQSTSSPLIN CTGAAPNSDY WPFAPNIFHS
201: SITNTNASMD IPVIGMEFNT RGHGHAGDAS SIHL
101: DPASVRKPKR RNVRISDDPQ SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLDEAILY VKFLKRQIRL LQSTSSPLIN CTGAAPNSDY WPFAPNIFHS
201: SITNTNASMD IPVIGMEFNT RGHGHAGDAS SIHL
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.