Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400011370 | |
| PGSC0003DMT400068177 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | PGSC0003DMT400011370 | AT2G38270.1 | 21798944 |
| AT4G00120.1 | PGSC0003DMT400068177 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g005780.1.1 | Tomato | nucleus | 93.13 | 86.22 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 30.92 | 66.39 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 32.06 | 50.0 |
| KRH53884 | Soybean | nucleus | 43.89 | 49.15 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 37.02 | 48.99 |
| KRH64060 | Soybean | nucleus | 45.04 | 48.56 |
| GSMUA_Achr11P... | Banana | nucleus | 34.73 | 47.64 |
| PGSC0003DMT400048857 | Potato | nucleus | 26.72 | 47.3 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 38.93 | 45.74 |
| CDX91916 | Canola | cytosol | 29.39 | 43.26 |
| CDX74329 | Canola | cytosol | 29.01 | 41.76 |
| Bra000979.1-P | Field mustard | cytosol | 29.01 | 41.08 |
| AT4G00120.1 | Thale cress | nucleus | 30.15 | 39.9 |
| Zm00001d049721_P001 | Maize | nucleus | 37.4 | 34.15 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 39.69 | 33.23 |
| PGSC0003DMT400010344 | Potato | nucleus | 28.24 | 33.04 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 39.31 | 32.49 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 39.69 | 32.4 |
| Os08t0108500-01 | Rice | nucleus | 37.4 | 32.03 |
| PGSC0003DMT400020558 | Potato | nucleus | 30.53 | 31.62 |
| Zm00001d035027_P001 | Maize | nucleus | 39.31 | 30.75 |
| EES14382 | Sorghum | nucleus | 39.69 | 29.89 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 38.55 | 29.79 |
| PGSC0003DMT400008370 | Potato | nucleus | 14.89 | 19.7 |
| PGSC0003DMT400006453 | Potato | nucleus | 24.43 | 16.58 |
| PGSC0003DMT400012487 | Potato | nucleus | 22.9 | 15.38 |
| PGSC0003DMT400030165 | Potato | nucleus | 9.54 | 13.74 |
| PGSC0003DMT400089728 | Potato | nucleus | 15.27 | 13.11 |
| PGSC0003DMT400055446 | Potato | nucleus | 17.18 | 12.47 |
| PGSC0003DMT400087143 | Potato | nucleus | 15.27 | 12.01 |
| PGSC0003DMT400078776 | Potato | nucleus | 13.74 | 11.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073760 | EnsemblPlantsGene:PGSC0003DMG400028657 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400028657 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002960147 | UniProt:M1CSM2 | MapMan:15.5.32 | : |
Description
Basic helix-loop-helix protein BHLH12 [Source:PGSC_GENE;Acc:PGSC0003DMG400028657]
Coordinates
chr11:-:6920825..6921714
Molecular Weight (calculated)
30277.2 Da
IEP (calculated)
6.319
GRAVY (calculated)
-1.004
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNMDNEHVF RDQQQQQQQP CLSSIPNDHI YHDHHHHHQQ QQQFHFEHNP IWPSFPLQNP QHHHLPSSSS QQQQQEEVVP FDHVLNNHVQ TLIEDHNNQE
101: HDDQDEDEEE EELGAMKEMM FKIASMQPVD IDPSTIRKPK RRNVRISNDP QSVAARLRRE RISEKIRILQ RLVPGGTKMD TASMLDEAIR YVKFLKRQIR
201: NLQSSNHNLP PAQIPGPSCP NNENWANIVT PSTKGLILGS SSNVTTFVGN TTSDPTYEVI GN
101: HDDQDEDEEE EELGAMKEMM FKIASMQPVD IDPSTIRKPK RRNVRISNDP QSVAARLRRE RISEKIRILQ RLVPGGTKMD TASMLDEAIR YVKFLKRQIR
201: NLQSSNHNLP PAQIPGPSCP NNENWANIVT PSTKGLILGS SSNVTTFVGN TTSDPTYEVI GN
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.