Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062460.2.1 | Tomato | nucleus | 90.51 | 90.28 |
| PGSC0003DMT400048857 | Potato | nucleus | 14.87 | 39.19 |
| PGSC0003DMT400006453 | Potato | nucleus | 36.41 | 36.79 |
| PGSC0003DMT400020558 | Potato | nucleus | 19.74 | 30.43 |
| PGSC0003DMT400010344 | Potato | nucleus | 16.67 | 29.02 |
| PGSC0003DMT400073760 | Potato | nucleus | 15.38 | 22.9 |
| PGSC0003DMT400008370 | Potato | nucleus | 10.0 | 19.7 |
| PGSC0003DMT400030165 | Potato | nucleus | 8.46 | 18.13 |
| PGSC0003DMT400055446 | Potato | nucleus | 16.41 | 17.73 |
| PGSC0003DMT400087143 | Potato | nucleus | 14.1 | 16.52 |
| PGSC0003DMT400089728 | Potato | nucleus | 12.56 | 16.07 |
| PGSC0003DMT400078776 | Potato | nucleus | 11.79 | 14.51 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012487 | EnsemblPlantsGene:PGSC0003DMG400004875 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF293 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400004875 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000294806B | UniProt:M1A1A7 | MapMan:15.5.32 | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004875]
Coordinates
chr6:+:48933807..48935778
Molecular Weight (calculated)
42995.0 Da
IEP (calculated)
5.989
GRAVY (calculated)
-0.532
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFQEFGAAF DPIDILSSWN ISQRQEAATR LAADSVAAKS GAGSIGDCTN SKIGSSSSFP PRNNYLPYLG NNQVPICGLM ADVSSIGLFS KNRSPDCLLS
101: ATNTSNTNTS GELDDVIFSD DSESLWNIHT NNAVSSGESA IDAYKSKPID ANDNNNIHYS VNELDETVSC NNFITSSEGN RYNMDKRSHN ALLESDSSNR
201: DYVFQLISEN DQPKSKKSRS EYKLPSSSNI NFQQASSSAC SIVDPDSEAI AQMKEMIYRA AAFRPVSSVR EDVMAEKPKR KNVRISMDPQ TATARRRREK
301: ISERIRILQK LVPGGSNMDT ASMLDEAANY LKFLRTQVNA LGAFGFNIDP SIINNNFTTS LSSIPLINYP FPLQPHFPMQ NLNPIHHPKC
101: ATNTSNTNTS GELDDVIFSD DSESLWNIHT NNAVSSGESA IDAYKSKPID ANDNNNIHYS VNELDETVSC NNFITSSEGN RYNMDKRSHN ALLESDSSNR
201: DYVFQLISEN DQPKSKKSRS EYKLPSSSNI NFQQASSSAC SIVDPDSEAI AQMKEMIYRA AAFRPVSSVR EDVMAEKPKR KNVRISMDPQ TATARRRREK
301: ISERIRILQK LVPGGSNMDT ASMLDEAANY LKFLRTQVNA LGAFGFNIDP SIINNNFTTS LSSIPLINYP FPLQPHFPMQ NLNPIHHPKC
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.