Factsheet for PGSC0003DMT400078776

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011576
PGSC0003DMT400044708
PGSC0003DMT400052805
PGSC0003DMT400068352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66470.1	PGSC0003DMT400044708	AT2G42870.1	21798944
AT1G66470.1	PGSC0003DMT400011576	AT5G47100.1	21798944
AT1G66470.1	PGSC0003DMT400052805	AT5G47100.1	21798944
AT1G66470.1	PGSC0003DMT400068352	AT5G47100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091440.1.1	Tomato	nucleus	96.21	96.21
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	26.81	70.25
VIT_14s0006g01470.t01	Wine grape	nucleus	52.37	47.84
KRH15121	Soybean	nucleus	40.06	43.34
CDY55674	Canola	nucleus	39.43	43.1
KRH73015	Soybean	nucleus	40.06	43.05
CDX68049	Canola	nucleus	38.8	42.41
CDX96145	Canola	nucleus	38.8	42.41
CDY11694	Canola	nucleus	38.8	42.41
KRG97923	Soybean	nucleus	44.16	41.3
KRH30960	Soybean	nucleus	43.85	41.0
AT1G66470.1	Thale cress	nucleus	37.85	40.27
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	34.38	39.78
CDY58387	Canola	nucleus	38.17	39.41
CDY61813	Canola	nucleus	37.85	39.34
TraesCS3B01G010400.1	Wheat	nucleus	33.75	39.05
TraesCS3B01G007700.1	Wheat	nucleus	33.75	39.05
AT5G37800.1	Thale cress	nucleus	37.54	38.76
Bra019708.1-P	Field mustard	nucleus	37.54	38.76
GSMUA_Achr10P...	Banana	nucleus	35.96	38.26
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	33.12	38.18
Bra004169.1-P	Field mustard	nucleus	32.18	38.06
GSMUA_Achr2P22860_001	Banana	nucleus	35.33	34.78
Os02t0710300-01	Rice	nucleus	32.18	34.0
EES00435	Sorghum	nucleus	30.91	33.79
Zm00001d017804_P001	Maize	nucleus	30.6	32.88
GSMUA_Achr6P09370_001	Banana	nucleus	35.02	32.74
TraesCS7A01G229900.1	Wheat	nucleus	29.34	32.63
TraesCS6D01G256600.1	Wheat	nucleus	29.65	32.53
TraesCS7B01G195800.1	Wheat	nucleus	29.65	32.19
TraesCS7D01G230600.1	Wheat	nucleus	29.02	32.17
EES07381	Sorghum	nucleus	30.91	32.03
TraesCS6B01G303600.1	Wheat	cytosol, nucleus, plastid	28.39	31.69
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	28.71	31.49
Zm00001d008444_P001	Maize	nucleus	32.18	31.38
TraesCS6A01G276100.1	Wheat	nucleus	28.71	31.27
Os01t0111500-01	Rice	nucleus	29.02	31.19
TraesCS6B01G303500.1	Wheat	nucleus	28.08	31.12
TraesCS6D01G256500.1	Wheat	cytosol	27.76	31.1
TraesCS6D01G256300.1	Wheat	nucleus	28.39	30.61
HORVU7Hr1G046580.1	Barley	plasma membrane, vacuole	30.6	29.31
TraesCS6D01G256400.1	Wheat	nucleus	25.24	29.09
Os06t0496400-01	Rice	nucleus	23.97	25.85
PGSC0003DMT400048857	Potato	nucleus	11.99	25.68
PGSC0003DMT400008370	Potato	nucleus	15.77	25.25
PGSC0003DMT400020558	Potato	nucleus	14.2	17.79
PGSC0003DMT400030165	Potato	nucleus	10.09	17.58
PGSC0003DMT400087143	Potato	nucleus	18.3	17.42
PGSC0003DMT400010344	Potato	nucleus	12.3	17.41
PGSC0003DMT400089728	Potato	nucleus	16.72	17.38
PGSC0003DMT400055446	Potato	nucleus	19.56	17.17
PGSC0003DMT400073760	Potato	nucleus	11.36	13.74
PGSC0003DMT400006453	Potato	nucleus	14.51	11.92
PGSC0003DMT400012487	Potato	nucleus	14.51	11.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400078776	EnsemblPlantsGene:PGSC0003DMG400030650	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF19	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400030650	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296442D	UniProt:M1D0P9	MapMan:15.5.32	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030650]

Coordinates

chr2:-:41855154..41857127

Molecular Weight (calculated)

35040.7 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.747

Length

317 amino acids

Sequence
(BLAST)

001: MALAKEHVIM SDTKMGMVDN YDQYYEGEFG INDHSSPELY GIHEEPPKSI FEECENSEKT SPKIAKNFAL SSSNSSLSSP SSSNSNGQSV INFKGVYGNF
101: MHSANGSLLS FEQSERFCPN PRMISSINQV EGSVWEDNNL HYQNCVTPKG SSNTSPRVIN ENSNNNGIPF GWLNSEANAS ITTHVDESRF NKRPSTEESM
201: QTNKKQCTAG SKKGKPNNNN SVGTKDPQSI AAKNRRERIS ERLKILQELV PNGSKVDLVT MLEKAIGYVK FLQLQVTVLA TDEFWPTQGG KAPDISQVKE
301: AIDAILATQR DRNSTSK

Best Arabidopsis Sequence Match ( AT1G66470.1 )
(BLAST)

001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN

Arabidopsis Description

BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.