Factsheet for PGSC0003DMT400030165

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088380.1.1	Tomato	nucleus	91.21	59.93
PGSC0003DMT400008370	Potato	nucleus	38.46	35.35
PGSC0003DMT400055446	Potato	nucleus	60.99	30.75
TraesCS2B01G212700.1	Wheat	nucleus	41.76	25.17
TraesCS2A01G194200.1	Wheat	nucleus	41.21	24.83
TraesCS2D01G193700.1	Wheat	nucleus	41.21	24.83
HORVU2Hr1G035190.9	Barley	nucleus	40.66	24.75
Os12t0589000-00	Rice	nucleus	41.21	24.67
TraesCS5D01G078800.1	Wheat	nucleus	39.01	24.57
TraesCS5A01G067600.1	Wheat	nucleus	39.01	24.48
EER91225	Sorghum	nucleus	40.11	24.33
PGSC0003DMT400089728	Potato	nucleus	40.11	23.93
TraesCS5B01G074500.1	Wheat	nucleus	37.91	23.79
PGSC0003DMT400087143	Potato	nucleus	43.41	23.72
TraesCS4A01G234500.1	Wheat	nucleus	40.66	23.72
TraesCS4D01G079500.1	Wheat	nucleus	40.66	23.64
TraesCS4B01G080700.1	Wheat	nucleus	40.11	23.4
EES17296	Sorghum	nucleus	38.46	22.15
Zm00001d041351_P001	Maize	nucleus	29.67	17.76
HORVU5Hr1G018100.1	Barley	cytosol, mitochondrion, nucleus	30.22	17.63
PGSC0003DMT400048857	Potato	nucleus	13.74	16.89
PGSC0003DMT400010344	Potato	nucleus	15.38	12.5
PGSC0003DMT400020558	Potato	nucleus	15.93	11.46
PGSC0003DMT400078776	Potato	nucleus	17.58	10.09
PGSC0003DMT400073760	Potato	nucleus	13.74	9.54
PGSC0003DMT400006453	Potato	nucleus	18.68	8.81
PGSC0003DMT400012487	Potato	nucleus	18.13	8.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400030165	EnsemblPlantsGene:PGSC0003DMG400011547	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
PANTHER:PTHR16223	PANTHER:PTHR16223:SF105	PGSC:PGSC0003DMG400011547	SEG:seg	UniParc:UPI000294A936	UniProt:M1ATU1
MapMan:15.5.32	:	:	:	:	:

Description

Helix-loop-helix DNA-binding domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011547]

Coordinates

chr12:+:56255714..56257164

Molecular Weight (calculated)

20639.2 Da

IEP (calculated)

6.544

GRAVY (calculated)

-1.091

Length

182 amino acids

Sequence
(BLAST)

001: MMGNKNVENS LSNDDYVMKE NIGNNYSQLD NEMLLKRKFD KVEVQSITEE EKIKESENPN KKSKVSRDHG PKNKKNSQPK AKKNQKNIQM NTEEVGDKET
101: NNNGQSTSCC SSEDDSNLKT KTRASRGAAT DPQSLYARVD LSTMLEEAVH YVKFLQTQIK LLSSDDMWMY APIAYNGMGL DL

Best Arabidopsis Sequence Match ( AT4G33880.1 )
(BLAST)

001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR

Arabidopsis Description

BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.