Factsheet for Solyc12g088380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030165	Potato	nucleus	59.93	91.21
Solyc04g077960.1.1	Tomato	nucleus	56.32	43.94
Solyc10g049780.1.1	Tomato	nucleus	30.32	30.88
Solyc01g107140.1.1	Tomato	nucleus	36.1	30.3
TraesCS2B01G212700.1	Wheat	nucleus	32.85	30.13
HORVU2Hr1G035190.9	Barley	nucleus	32.49	30.1
EER91225	Sorghum	nucleus	32.49	30.0
TraesCS2A01G194200.1	Wheat	nucleus	32.49	29.8
TraesCS2D01G193700.1	Wheat	nucleus	32.49	29.8
Solyc10g049720.1.1	Tomato	nucleus	31.41	29.19
TraesCS5D01G078800.1	Wheat	nucleus	29.6	28.37
Os12t0589000-00	Rice	nucleus	31.05	28.29
TraesCS5A01G067600.1	Wheat	nucleus	29.24	27.93
TraesCS5B01G074500.1	Wheat	nucleus	28.88	27.59
TraesCS4A01G234500.1	Wheat	nucleus	31.05	27.56
TraesCS4D01G079500.1	Wheat	nucleus	31.05	27.48
TraesCS4B01G080700.1	Wheat	nucleus	30.69	27.24
EES17296	Sorghum	nucleus	28.52	25.0
Zm00001d041351_P001	Maize	nucleus	23.47	21.38
HORVU5Hr1G018100.1	Barley	cytosol, mitochondrion, nucleus	23.47	20.83
Solyc09g005070.1.1	Tomato	nucleus	10.47	19.59
Solyc12g088790.1.1	Tomato	nucleus	7.58	17.36
Solyc03g044460.1.1	Tomato	nucleus	8.66	16.44
Solyc04g078790.2.1	Tomato	nucleus	12.64	14.23
Solyc02g091440.1.1	Tomato	nucleus	15.52	13.56
Solyc02g090950.1.1	Tomato	nucleus	10.83	13.51
Solyc06g062460.2.1	Tomato	nucleus	14.8	10.49
Solyc03g121240.1.1	Tomato	nucleus	14.08	10.26
Solyc11g005780.1.1	Tomato	nucleus	9.75	9.54

Protein Annotations

MapMan:15.5.32	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	UniProt:K4DGQ9	PANTHER:PTHR16223	PANTHER:PTHR16223:SF105	EnsemblPlantsGene:Solyc12g088380.1	EnsemblPlants:Solyc12g088380.1.1
UniParc:UPI000276AB4E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:63793937..63795676

Molecular Weight (calculated)

31753.4 Da

IEP (calculated)

4.655

GRAVY (calculated)

-1.012

Length

277 amino acids

Sequence
(BLAST)

001: MEQMGASFDE EYCQSLSKMF LNENSSDFMF QLHGEDNIIE GSFFSSSNSH TSNNNIDYFS QENSIDSRGS DAMFFLNNNT SHEYLQYNYD VESTNFYMTG
101: NKMNLENSLS NDDYVMKENI GNNYSQLDKE MLLKRKFDKV EVQSTTQEET HKEFENPKKK SKVSRDHGQK NKKNSQPKAK KNIQMNNEEV GDKETNNNGQ
201: STSSCSSEDD SNLKTKTRAS RGAATDPQSL YARVDLSTML EEAVHYVKFL QTQIKLLSSD DMWMYAPIAY NGMGIDL

Best Arabidopsis Sequence Match ( AT4G33880.1 )
(BLAST)

001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR

Arabidopsis Description

BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.