Factsheet for HORVU5Hr1G018100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G074500.1	Wheat	nucleus	81.41	87.59
TraesCS5D01G078800.1	Wheat	nucleus	81.09	87.54
TraesCS5A01G067600.1	Wheat	nucleus	79.49	85.52
HORVU1Hr1G043780.1	Barley	mitochondrion, nucleus	12.5	65.0
Os12t0589000-00	Rice	nucleus	57.37	58.88
EES17296	Sorghum	nucleus	52.88	52.22
Zm00001d041351_P001	Maize	nucleus	30.13	30.92
PGSC0003DMT400030165	Potato	nucleus	17.63	30.22
HORVU2Hr1G035190.9	Barley	nucleus	27.88	29.1
HORVU4Hr1G069820.2	Barley	nucleus	29.49	27.96
Solyc04g077960.1.1	Tomato	nucleus	31.09	27.32
HORVU5Hr1G097520.1	Barley	nucleus	25.32	27.05
PGSC0003DMT400055446	Potato	nucleus	30.77	26.59
Solyc12g088380.1.1	Tomato	nucleus	20.83	23.47
HORVU7Hr1G054880.1	Barley	nucleus	13.14	18.47
HORVU0Hr1G019640.1	Barley	cytosol	10.9	18.28
HORVU5Hr1G068110.1	Barley	nucleus	13.46	17.65
HORVU3Hr1G087710.1	Barley	nucleus	11.54	17.14
HORVU7Hr1G046580.1	Barley	plasma membrane, vacuole	15.71	14.8
HORVU1Hr1G079450.1	Barley	nucleus	16.35	12.75
HORVU3Hr1G066600.2	Barley	nucleus	16.35	12.59
HORVU7Hr1G077270.3	Barley	cytosol	13.46	12.39
HORVU6Hr1G069690.3	Barley	cytosol	10.58	9.79
HORVU3Hr1G048770.1	Barley	plastid	14.1	9.13

Protein Annotations

EnsemblPlants:HORVU5Hr1G018100.1	EnsemblPlantsGene:HORVU5Hr1G018100	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000B465CE9	UniProt:A0A287QIQ3	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:72275854..72277470

Molecular Weight (calculated)

33788.5 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.623

Length

312 amino acids

Sequence
(BLAST)

001: HPSRQQVPPT TLPRPPFASK APKSQIHISM EAGGLISEAG WTMFDFLPQG EESDIMAQLL GTFPSSHVEE AQQDLPWYQA SHPSYYDTDV HTSACSDSNA
101: SSFAVPSECM GYYLGDSSEA LGISSCTTPQ DLNLVQEQGA TEFLNMIPSI SHDLFGNGES SCEGLDSASA TNKRKHSVEE EIDGQAKGRK CARKAAPKRA
201: KNGKQTEASC CTSDNDSNAS QESADAGVTP KGKARAGRGA ATDPQSLYAR KRRERINERL KTLQTLVPNG TKVDMSTMLE EAVQYVKFLQ LQIKVSSALM
301: KCGCTRRLRT TG

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.