Factsheet for Solyc04g077960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055446	Potato	nucleus	95.49	93.91
Solyc12g088380.1.1	Tomato	nucleus	43.94	56.32
Solyc10g049720.1.1	Tomato	nucleus	34.93	41.61
Solyc01g107140.1.1	Tomato	nucleus	37.75	40.61
Solyc10g049780.1.1	Tomato	nucleus	30.7	40.07
TraesCS5D01G078800.1	Wheat	nucleus	30.99	38.06
TraesCS5A01G067600.1	Wheat	nucleus	30.42	37.24
TraesCS5B01G074500.1	Wheat	nucleus	29.86	36.55
TraesCS4A01G234500.1	Wheat	nucleus	32.11	36.54
TraesCS4D01G079500.1	Wheat	nucleus	31.83	36.1
TraesCS4B01G080700.1	Wheat	nucleus	31.55	35.9
Os12t0589000-00	Rice	nucleus	30.7	35.86
HORVU2Hr1G035190.9	Barley	nucleus	30.14	35.79
EER91225	Sorghum	nucleus	30.14	35.67
TraesCS2D01G193700.1	Wheat	nucleus	30.14	35.43
TraesCS2A01G194200.1	Wheat	nucleus	30.14	35.43
TraesCS2B01G212700.1	Wheat	nucleus	29.86	35.1
EES17296	Sorghum	nucleus	30.99	34.81
Solyc12g088790.1.1	Tomato	nucleus	10.99	32.23
HORVU5Hr1G018100.1	Barley	cytosol, mitochondrion, nucleus	27.32	31.09
Zm00001d041351_P001	Maize	nucleus	25.07	29.28
Solyc03g044460.1.1	Tomato	nucleus	11.83	28.77
Solyc09g005070.1.1	Tomato	nucleus	11.55	27.7
Solyc02g090950.1.1	Tomato	nucleus	14.08	22.52
Solyc04g078790.2.1	Tomato	nucleus	15.21	21.95
Solyc02g091440.1.1	Tomato	nucleus	17.75	19.87
Solyc11g005780.1.1	Tomato	nucleus	13.52	16.96
Solyc06g062460.2.1	Tomato	nucleus	18.31	16.62
Solyc03g121240.1.1	Tomato	nucleus	17.46	16.32

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K4BUN3	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF105
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc04g077960.1	EnsemblPlants:Solyc04g077960.1.1	UniParc:UPI0002766856	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:62821259..62822699

Molecular Weight (calculated)

40022.5 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.872

Length

355 amino acids

Sequence
(BLAST)

001: MEHVGAFFDE EWESLSKLFS STETADFMLQ LQGDHGSMFS MNGSDNAGSS YRTDNPQVAF SQLSDEVNNN FQYLSQESSI TSCGSDHGMF FTNPSHDHLQ
101: HSNNIDDVNN KLLQVAINNN LPDEYQSIDF FDMDSKNLEN LCINQDFQAE MVCDQLDNAG ISPVPHKEMQ LKRKCDKIAH ENPKKKSRGS QDAQKSTKKK
201: MQPKKGKKNQ KMTQINNEEG EEETNNNADN QIAQSSSCCS SEDDSNASQE LNGGTVSSNP KGKSRASRGA ATDPQSLYAR RRRERINERL RILQNLVPNG
301: TKVDISTMLE EAVTYVKFLQ LQIKLLSSDE LWMYAPLAYH GMDIGIYQKM LPNMQ

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.