Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020558 | Potato | nucleus | 95.53 | 92.89 |
| Solyc12g088790.1.1 | Tomato | nucleus | 39.02 | 79.34 |
| Solyc03g044460.1.1 | Tomato | nucleus | 34.55 | 58.22 |
| VIT_18s0001g10400.t01 | Wine grape | nucleus | 53.66 | 53.23 |
| VIT_07s0031g00550.t01 | Wine grape | nucleus | 52.85 | 51.59 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 30.49 | 49.02 |
| Solyc02g090950.1.1 | Tomato | nucleus | 43.09 | 47.75 |
| GSMUA_Achr10P... | Banana | nucleus | 43.5 | 44.21 |
| KRH61303 | Soybean | nucleus | 47.15 | 43.94 |
| Solyc09g005070.1.1 | Tomato | nucleus | 19.11 | 31.76 |
| Solyc11g005780.1.1 | Tomato | nucleus | 34.55 | 30.04 |
| Solyc03g121240.1.1 | Tomato | nucleus | 31.3 | 20.26 |
| Solyc06g062460.2.1 | Tomato | nucleus | 31.71 | 19.95 |
| Solyc10g049720.1.1 | Tomato | nucleus | 19.51 | 16.11 |
| Solyc04g077960.1.1 | Tomato | nucleus | 21.95 | 15.21 |
| Solyc10g049780.1.1 | Tomato | nucleus | 16.67 | 15.07 |
| Solyc01g107140.1.1 | Tomato | nucleus | 19.92 | 14.85 |
| Solyc02g091440.1.1 | Tomato | nucleus | 17.48 | 13.56 |
| Solyc12g088380.1.1 | Tomato | nucleus | 14.23 | 12.64 |
Protein Annotations
| EnsemblPlants:Solyc04g078790.2.1 | EnsemblPlantsGene:Solyc04g078790.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002766C30 | UniProt:K4BUW4 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chr4:+:63458764..63460076
Molecular Weight (calculated)
27423.8 Da
IEP (calculated)
8.710
GRAVY (calculated)
-0.535
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDMLKSSA TSEDQMEMML MMQLEKFPEF STGNCSELPM MEFSPQGSCN SSNNFQQMDQ NSPNFLNMPS TISFTNSPPI HQNSPNFIPN SGGFNSNSMN
101: RSNMAAMREM IFRIAAMQPI NIDPESVKPP KRRNVKISTD PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKNQV QSLERAGATR
201: PANGTALTAA AAGLGFPVPM SLSGNYNLPV STKNYHHQNI QQYADV
101: RSNMAAMREM IFRIAAMQPI NIDPESVKPP KRRNVKISTD PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKNQV QSLERAGATR
201: PANGTALTAA AAGLGFPVPM SLSGNYNLPV STKNYHHQNI QQYADV
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.