Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g093280.2.1 | |
| Solyc12g088790.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | Solyc12g088790.1.1 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | Solyc02g093280.2.1 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g044460.1.1 | Tomato | nucleus | 62.81 | 52.05 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 69.42 | 40.58 |
| CDY18636 | Canola | nucleus | 68.59 | 40.49 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 68.59 | 40.49 |
| Solyc02g090950.1.1 | Tomato | nucleus | 71.9 | 39.19 |
| Solyc04g078790.2.1 | Tomato | nucleus | 79.34 | 39.02 |
| Bra036071.1-P | Field mustard | nucleus | 67.77 | 38.5 |
| CDY30593 | Canola | nucleus | 67.77 | 38.5 |
| CDY12799 | Canola | nucleus | 67.77 | 37.61 |
| CDX68583 | Canola | nucleus | 70.25 | 37.44 |
| CDY63952 | Canola | nucleus | 71.07 | 37.23 |
| Bra036801.1-P | Field mustard | nucleus | 71.07 | 37.23 |
| CDY43559 | Canola | nucleus | 71.07 | 37.23 |
| CDX83121 | Canola | nucleus | 70.25 | 36.96 |
| Bra030002.1-P | Field mustard | nucleus | 70.25 | 36.96 |
| AT3G50330.1 | Thale cress | nucleus | 70.25 | 36.8 |
| CDY17765 | Canola | nucleus | 68.59 | 36.73 |
| Bra012128.1-P | Field mustard | nucleus | 66.12 | 36.53 |
| CDY01443 | Canola | nucleus | 66.12 | 36.53 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 64.46 | 35.45 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 64.46 | 35.29 |
| AT5G67060.1 | Thale cress | nucleus | 70.25 | 35.27 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 64.46 | 35.14 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 63.64 | 35.0 |
| KRH28464 | Soybean | nucleus | 68.59 | 34.3 |
| KRH77007 | Soybean | nucleus | 67.77 | 32.67 |
| Zm00001d050016_P001 | Maize | nucleus | 64.46 | 32.37 |
| Os09t0455300-01 | Rice | nucleus | 62.81 | 32.2 |
| KRH57944 | Soybean | nucleus | 66.12 | 31.5 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 61.16 | 31.09 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 60.33 | 31.06 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 60.33 | 31.06 |
| Zm00001d020705_P001 | Maize | nucleus | 61.98 | 30.99 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 59.5 | 30.64 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 59.5 | 30.64 |
| KRH04603 | Soybean | nucleus | 70.25 | 30.14 |
| Zm00001d031781_P001 | Maize | nucleus | 60.33 | 29.08 |
| Solyc09g005070.1.1 | Tomato | nucleus | 35.54 | 29.05 |
| EES15124 | Sorghum | nucleus | 64.46 | 29.0 |
| Zm00001d005841_P001 | Maize | nucleus | 57.85 | 28.93 |
| EER96848 | Sorghum | nucleus | 61.98 | 28.74 |
| Solyc11g005780.1.1 | Tomato | nucleus | 59.5 | 25.44 |
| Solyc03g121240.1.1 | Tomato | nucleus | 50.41 | 16.05 |
| Solyc06g062460.2.1 | Tomato | nucleus | 47.93 | 14.83 |
| Solyc10g049780.1.1 | Tomato | nucleus | 27.27 | 12.13 |
| Solyc10g049720.1.1 | Tomato | nucleus | 28.1 | 11.41 |
| Solyc01g107140.1.1 | Tomato | nucleus | 30.58 | 11.21 |
| Solyc02g091440.1.1 | Tomato | nucleus | 28.93 | 11.04 |
| Solyc04g077960.1.1 | Tomato | nucleus | 32.23 | 10.99 |
| Solyc12g088380.1.1 | Tomato | nucleus | 17.36 | 7.58 |
Protein Annotations
| EnsemblPlants:Solyc12g088790.1.1 | EnsemblPlantsGene:Solyc12g088790.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000276945E |
| UniProt:K4DGV0 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:64023376..64024531
Molecular Weight (calculated)
14001.3 Da
IEP (calculated)
10.817
GRAVY (calculated)
-0.541
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAMREMIFR IAAMQPIQID PSSVKAPKRR NVKISSDPQS VAARHRRERI SEKIRILQRL VPGGTKMDTA SMLDEAIHYM KFLKKQVQSL EKVEINRPMS
101: MSLSGNYLPN YNYPYHQSVQ P
101: MSLSGNYLPN YNYPYHQSVQ P
001: MEKLPEFCNP NSSFFSPDHN NTYPFLFNST HYQSDHSMTN EPGFRYGSGL LTNPSSISPN TAYSSVFLDK RNNSNNNNNG TNMAAMREMI FRIAVMQPIH
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
101: IDPEAVKPPK RRNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEQAVVTG GGGGGGGRVL IGGGGMTAAS
201: GGGGGGGVVM KGCGTVGTHQ MVGNAQILR
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.