CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68583
CDX69281
CDX75629
CDX83121
CDY17765
CDY22448
CDY30593
CDY44048

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50330.1	CDX68583	AT3G50330.1	21798944
AT3G50330.1	CDX83121	AT3G50330.1	21798944
AT3G50330.1	CDY17765	AT3G50330.1	21798944
AT3G50330.1	CDY30593	AT3G50330.1	21798944
AT3G50330.1	CDX69281	AT4G36930.1	17855426
AT3G50330.1	CDX75629	AT4G36930.1	17855426
AT3G50330.1	CDY22448	AT4G36930.1	17855426
AT3G50330.1	CDY44048	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030002.1-P	Field mustard	nucleus	97.36	96.09
CDX83121	Canola	nucleus	97.36	96.09
AT3G50330.1	Thale cress	nucleus	89.43	87.88
CDY17765	Canola	nucleus	85.9	86.28
CDY30593	Canola	nucleus	80.62	85.92
CDY18636	Canola	nucleus	66.08	73.17
CDX81342	Canola	cytoskeleton, cytosol, nucleus	66.08	72.46
CDY43559	Canola	nucleus	72.25	71.0
Solyc12g088790.1.1	Tomato	nucleus	37.44	70.25
CDY63952	Canola	nucleus	70.93	69.7
CDY12799	Canola	nucleus	64.76	67.43
CDY01443	Canola	nucleus	64.32	66.67
PGSC0003DMT400048857	Potato	nucleus	36.12	55.41
KRH28464	Soybean	nucleus	51.54	48.35
KRH77007	Soybean	nucleus	51.1	46.22
PGSC0003DMT400010344	Potato	nucleus	45.37	45.98
TraesCS7D01G263400.1	Wheat	nucleus	42.29	43.64
HORVU7Hr1G054880.1	Barley	nucleus	42.29	43.24
TraesCS7A01G262600.1	Wheat	nucleus	41.85	43.18
TraesCS7B01G160500.1	Wheat	nucleus	41.41	42.53
KRH57944	Soybean	nucleus	47.58	42.52
KRH04603	Soybean	nucleus	51.1	41.13
Zm00001d050016_P001	Maize	nucleus	41.85	39.42
Os09t0455300-01	Rice	nucleus	40.53	38.98
CDX91916	Canola	cytosol	30.4	38.76
GSMUA_Achr9P15380_001	Banana	nucleus	40.97	37.96
CDX74329	Canola	cytosol	30.4	37.91
TraesCS5A01G237500.1	Wheat	nucleus	39.21	37.87
TraesCS5B01G235200.1	Wheat	nucleus	39.21	37.87
TraesCS6A01G142000.1	Wheat	nucleus	39.21	37.87
TraesCS5D01G244000.1	Wheat	nucleus	39.21	37.87
HORVU5Hr1G068110.1	Barley	nucleus	39.65	37.82
Zm00001d020705_P001	Maize	nucleus	40.09	37.6
Zm00001d031781_P001	Maize	nucleus	40.53	36.65
EES15124	Sorghum	nucleus	42.73	36.06
EER96848	Sorghum	nucleus	40.97	35.63
Zm00001d005841_P001	Maize	nucleus	37.89	35.54
CDX85799	Canola	nucleus	33.04	35.05
CDY64847	Canola	nucleus	33.04	34.88
CDY21597	Canola	nucleus	32.16	32.74
CDY55900	Canola	nucleus, plastid	19.82	25.42
CDY66929	Canola	nucleus, plastid	19.82	25.42
CDY51449	Canola	nucleus	33.04	22.59
CDY32423	Canola	nucleus	32.6	22.42
CDY48884	Canola	nucleus	32.6	22.09
CDY62045	Canola	nucleus	32.6	22.09
CDY15706	Canola	nucleus	18.94	20.28
CDX90106	Canola	nucleus	18.5	19.72
CDY03948	Canola	cytosol	11.89	18.62
CDY27630	Canola	nucleus	18.94	17.77
CDX84906	Canola	nucleus	18.94	17.62
CDY11802	Canola	nucleus	17.62	17.39
CDY11768	Canola	nucleus	19.38	17.19
CDY55674	Canola	nucleus	19.38	15.17
CDX96145	Canola	nucleus	18.94	14.83
CDY11694	Canola	nucleus	18.94	14.83
CDX68049	Canola	nucleus	18.94	14.83
CDY61813	Canola	nucleus	18.94	14.1
CDY58387	Canola	nucleus	18.94	14.01
CDY28328	Canola	nucleus	21.15	13.48
CDX69011	Canola	nucleus	19.82	12.97
CDY49379	Canola	nucleus	19.82	12.86
CDX72435	Canola	nucleus	19.82	12.86
CDX75386	Canola	nucleus	19.38	12.68
CDX81461	Canola	nucleus	17.62	11.56
CDY37221	Canola	nucleus	17.62	11.56
CDY48431	Canola	nucleus	15.86	11.21
CDY03946	Canola	nucleus	6.61	5.45

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078C0E2	EnsemblPlants:CDX68583	ProteinID:CDX68583	ProteinID:CDX68583.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00126182001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF74	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EC3354	InterPro:bHLH_dom	SEG:seg

Description

BnaC01g26610D

Coordinates

chrLK031788:-:4496839..4497522

Molecular Weight (calculated)

25230.5 Da

IEP (calculated)

10.215

GRAVY (calculated)

-0.616

Length

227 amino acids

Sequence
(BLAST)

001: MENSDMLMNM MMQQMEKLPD HFSNPNPNPN SHNIMMLSES NTHPFFFNPN HTHLPLLDQT ITHQPGLNFR YAPSTSSSLP DKRGGGGGDN ANMAAMREMI
101: FRIAVMQPIH IDPESVKPPK RKNVRISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKKQVQ SLEEHAVVNG GGVASAPTGV
201: GGGYGGKGCG TMRSDHHQML GNTQILR

Best Arabidopsis Sequence Match ( AT3G50330.1 )
(BLAST)

001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R

Arabidopsis Description

HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.