Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09750.1 | CDX69281 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDX75629 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDY22448 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDY44048 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85799 | Canola | nucleus | 98.6 | 99.07 |
| AT5G09750.1 | Thale cress | nucleus | 89.3 | 85.71 |
| CDY21597 | Canola | nucleus | 83.26 | 80.27 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 44.65 | 78.69 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 43.72 | 55.95 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 49.77 | 54.04 |
| GSMUA_Achr11P... | Banana | nucleus | 42.79 | 48.17 |
| CDX91916 | Canola | cytosol | 36.28 | 43.82 |
| KRH43543 | Soybean | nucleus | 54.42 | 43.17 |
| CDX74329 | Canola | cytosol | 36.28 | 42.86 |
| KRH59559 | Soybean | nucleus | 53.02 | 42.86 |
| Zm00001d049721_P001 | Maize | nucleus | 52.09 | 39.02 |
| Os08t0108500-01 | Rice | nucleus | 55.35 | 38.89 |
| CDY18636 | Canola | nucleus | 35.81 | 37.56 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 35.81 | 37.2 |
| CDY12799 | Canola | nucleus | 36.74 | 36.24 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 52.56 | 36.1 |
| Zm00001d035027_P001 | Maize | nucleus | 55.35 | 35.52 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 52.09 | 35.33 |
| CDY30593 | Canola | nucleus | 34.88 | 35.21 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 52.56 | 35.2 |
| CDY01443 | Canola | nucleus | 35.81 | 35.16 |
| EES14382 | Sorghum | nucleus | 55.81 | 34.48 |
| CDY17765 | Canola | nucleus | 34.88 | 33.19 |
| CDX68583 | Canola | nucleus | 34.88 | 33.04 |
| CDY43559 | Canola | nucleus | 35.35 | 32.9 |
| CDY63952 | Canola | nucleus | 35.35 | 32.9 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 51.16 | 32.45 |
| CDX83121 | Canola | nucleus | 34.42 | 32.17 |
| CDY55900 | Canola | nucleus, plastid | 22.79 | 27.68 |
| CDY66929 | Canola | nucleus, plastid | 22.79 | 27.68 |
| CDY15706 | Canola | nucleus | 20.93 | 21.23 |
| CDY03948 | Canola | cytosol | 13.49 | 20.0 |
| CDY51449 | Canola | nucleus | 30.7 | 19.88 |
| CDY62045 | Canola | nucleus | 30.7 | 19.7 |
| CDY32423 | Canola | nucleus | 30.23 | 19.7 |
| CDY48884 | Canola | nucleus | 29.77 | 19.1 |
| CDX90106 | Canola | nucleus | 18.6 | 18.78 |
| CDX84906 | Canola | nucleus | 19.53 | 17.21 |
| CDY27630 | Canola | nucleus | 18.6 | 16.53 |
| CDY11802 | Canola | nucleus | 17.21 | 16.09 |
| CDY11768 | Canola | nucleus | 19.07 | 16.02 |
| CDY61813 | Canola | nucleus | 20.0 | 14.1 |
| CDY55674 | Canola | nucleus | 18.6 | 13.79 |
| CDY58387 | Canola | nucleus | 19.53 | 13.68 |
| CDX96145 | Canola | nucleus | 18.14 | 13.45 |
| CDY11694 | Canola | nucleus | 18.14 | 13.45 |
| CDX68049 | Canola | nucleus | 18.14 | 13.45 |
| CDX75386 | Canola | nucleus | 20.93 | 12.97 |
| CDX69011 | Canola | nucleus | 20.93 | 12.97 |
| CDY28328 | Canola | nucleus | 21.4 | 12.92 |
| CDY49379 | Canola | nucleus | 20.93 | 12.86 |
| CDX72435 | Canola | nucleus | 20.93 | 12.86 |
| CDY37221 | Canola | nucleus | 20.0 | 12.43 |
| CDX81461 | Canola | nucleus | 20.0 | 12.43 |
| CDY48431 | Canola | nucleus | 15.81 | 10.59 |
| CDY03946 | Canola | nucleus | 4.65 | 3.64 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078JHG3 | UniProt:A0A078JHG3 | EnsemblPlants:CDY64847 | ProteinID:CDY64847 |
| ProteinID:CDY64847.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00042837001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF125 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EB251D | InterPro:bHLH_dom | SEG:seg |
Description
BnaCnng45350DBnaCnng45350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHG3]
Coordinates
chrLK034568:-:14237..14884
Molecular Weight (calculated)
24345.6 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.816
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNMNPSLF QNYTWNNIIN NNKSDDHHHN DPIGMAMDQH THLHFFNPFT SSSSHSHFPP LSSSLATTTT LFSGDQEEDE DEEEPVEELS AMKEMMYKIA
101: AMQPVDIDPA TVKKPKRRNV RISDDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIRYVKF LKRQIRLLNN PPPPQDQASQ ALKTSWISPP
201: PPSDFGSEGG GGELI
101: AMQPVDIDPA TVKKPKRRNV RISDDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIRYVKF LKRQIRLLNN PPPPQDQASQ ALKTSWISPP
201: PPSDFGSEGG GGELI
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.