Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68049 | Canola | nucleus | 96.55 | 96.55 |
| CDY11694 | Canola | nucleus | 96.55 | 96.55 |
| CDX96145 | Canola | nucleus | 96.55 | 96.55 |
| Bra004169.1-P | Field mustard | nucleus | 88.97 | 96.27 |
| CDY61813 | Canola | nucleus | 85.86 | 81.64 |
| AT1G66470.1 | Thale cress | nucleus | 83.79 | 81.54 |
| CDY58387 | Canola | nucleus | 86.21 | 81.43 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 28.97 | 69.42 |
| AT5G37800.1 | Thale cress | nucleus | 69.31 | 65.47 |
| KRH73015 | Soybean | nucleus | 42.76 | 42.03 |
| KRH15121 | Soybean | nucleus | 42.41 | 41.98 |
| Solyc02g091440.1.1 | Tomato | nucleus | 43.79 | 40.06 |
| PGSC0003DMT400078776 | Potato | nucleus | 43.1 | 39.43 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 35.52 | 37.59 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 35.52 | 37.59 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 35.52 | 37.59 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 35.17 | 37.09 |
| KRG97923 | Soybean | nucleus | 42.76 | 36.58 |
| GSMUA_Achr10P... | Banana | nucleus | 37.59 | 36.58 |
| Os02t0710300-01 | Rice | nucleus | 37.59 | 36.33 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 43.45 | 36.31 |
| KRH30960 | Soybean | nucleus | 42.07 | 35.99 |
| Zm00001d017804_P001 | Maize | nucleus | 36.21 | 35.59 |
| EES07381 | Sorghum | nucleus | 37.24 | 35.29 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 38.97 | 35.09 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 34.14 | 34.26 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 33.45 | 34.15 |
| EES00435 | Sorghum | nucleus | 33.79 | 33.79 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 39.31 | 33.63 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 33.45 | 33.33 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 32.76 | 33.22 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 32.41 | 33.22 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 32.76 | 32.87 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 32.76 | 32.53 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 32.76 | 32.31 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 30.34 | 32.0 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 31.38 | 31.82 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 31.03 | 31.58 |
| Os01t0111500-01 | Rice | nucleus | 32.07 | 31.53 |
| Zm00001d008444_P001 | Maize | nucleus | 34.48 | 30.77 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 32.07 | 28.1 |
| CDY03948 | Canola | cytosol | 13.79 | 27.59 |
| Os06t0496400-01 | Rice | nucleus | 27.93 | 27.55 |
| CDX90106 | Canola | nucleus | 18.62 | 25.35 |
| CDY15706 | Canola | nucleus | 18.28 | 25.0 |
| CDY27630 | Canola | nucleus | 19.66 | 23.55 |
| CDX84906 | Canola | nucleus | 19.66 | 23.36 |
| CDY11768 | Canola | nucleus | 20.0 | 22.66 |
| CDY66929 | Canola | nucleus, plastid | 13.79 | 22.6 |
| CDY55900 | Canola | nucleus, plastid | 13.79 | 22.6 |
| CDY18636 | Canola | nucleus | 15.52 | 21.95 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 15.17 | 21.26 |
| CDY11802 | Canola | nucleus | 16.55 | 20.87 |
| CDY30593 | Canola | nucleus | 15.17 | 20.66 |
| CDY12799 | Canola | nucleus | 15.17 | 20.18 |
| CDY01443 | Canola | nucleus | 14.83 | 19.63 |
| CDX83121 | Canola | nucleus | 15.52 | 19.57 |
| CDY17765 | Canola | nucleus | 15.17 | 19.47 |
| CDX68583 | Canola | nucleus | 15.17 | 19.38 |
| CDY43559 | Canola | nucleus | 15.17 | 19.05 |
| CDY63952 | Canola | nucleus | 15.17 | 19.05 |
| CDX85799 | Canola | nucleus | 13.79 | 18.69 |
| CDY64847 | Canola | nucleus | 13.79 | 18.6 |
| CDX91916 | Canola | cytosol | 11.38 | 18.54 |
| CDX81461 | Canola | nucleus | 21.72 | 18.21 |
| CDY37221 | Canola | nucleus | 21.72 | 18.21 |
| CDY21597 | Canola | nucleus | 13.79 | 17.94 |
| CDX75386 | Canola | nucleus | 21.38 | 17.87 |
| CDX72435 | Canola | nucleus | 21.38 | 17.71 |
| CDY28328 | Canola | nucleus | 21.72 | 17.7 |
| CDX69011 | Canola | nucleus | 21.03 | 17.58 |
| CDY49379 | Canola | nucleus | 20.69 | 17.14 |
| CDX74329 | Canola | cytosol | 10.69 | 17.03 |
| CDY62045 | Canola | nucleus | 16.21 | 14.03 |
| CDY51449 | Canola | nucleus | 15.86 | 13.86 |
| CDY32423 | Canola | nucleus | 15.52 | 13.64 |
| CDY48431 | Canola | nucleus | 14.83 | 13.4 |
| CDY48884 | Canola | nucleus | 15.17 | 13.13 |
| CDY03946 | Canola | nucleus | 6.9 | 7.27 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078J169 | UniProt:A0A078J169 | EnsemblPlants:CDY55674 | ProteinID:CDY55674 |
| ProteinID:CDY55674.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00017183001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF19 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE031E | InterPro:bHLH_dom | SEG:seg |
Description
BnaC06g43500DBnaC06g43500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J169]
Coordinates
chrLK033420:-:3712..4983
Molecular Weight (calculated)
31991.0 Da
IEP (calculated)
7.390
GRAVY (calculated)
-0.839
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLNDHPNE SNYISKQNSS SSDDPSSPEN YGLASSSSTM NSDHQQNHQG IVFYPSRESV EDHNSLLDFN GSSFLNFDNN NHYESFPHPT ISCGGGFSFL
101: EGNNMSYGFT NWSQHHMDII SPRPIETPGI NQGHKDWLYS DSTAVTTGSR HESLSPKSAG NKRSYTGESI QPPSKKPRSG GNGKAKPKPI TPPKDPQSLA
201: AKNRRERISE RLKILQELVP NGTKVDLVTM LEKAISYVKF LQLQVKVLAT DEFWPAQGGK APDISQVRDA IDAILSSSQR DKNSTPITNK
101: EGNNMSYGFT NWSQHHMDII SPRPIETPGI NQGHKDWLYS DSTAVTTGSR HESLSPKSAG NKRSYTGESI QPPSKKPRSG GNGKAKPKPI TPPKDPQSLA
201: AKNRRERISE RLKILQELVP NGTKVDLVTM LEKAISYVKF LQLQVKVLAT DEFWPAQGGK APDISQVRDA IDAILSSSQR DKNSTPITNK
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.