Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55674 | Canola | nucleus | 65.47 | 69.31 |
| CDY11694 | Canola | nucleus | 65.47 | 69.31 |
| CDX68049 | Canola | nucleus | 65.47 | 69.31 |
| CDX96145 | Canola | nucleus | 65.47 | 69.31 |
| AT1G66470.1 | Thale cress | nucleus | 67.1 | 69.13 |
| Bra004169.1-P | Field mustard | nucleus | 59.28 | 67.91 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 26.71 | 67.77 |
| CDY61813 | Canola | nucleus | 66.12 | 66.56 |
| CDY58387 | Canola | nucleus | 66.12 | 66.12 |
| Bra019708.1-P | Field mustard | nucleus | 65.8 | 65.8 |
| KRH73015 | Soybean | nucleus | 40.39 | 42.03 |
| KRH15121 | Soybean | nucleus | 40.07 | 41.98 |
| Solyc02g091440.1.1 | Tomato | nucleus | 38.76 | 37.54 |
| PGSC0003DMT400078776 | Potato | nucleus | 38.76 | 37.54 |
| KRG97923 | Soybean | nucleus | 40.39 | 36.58 |
| GSMUA_Achr10P... | Banana | nucleus | 35.5 | 36.58 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 32.57 | 36.5 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 32.57 | 36.5 |
| Os02t0710300-01 | Rice | nucleus | 35.5 | 36.33 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 32.25 | 36.13 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 32.25 | 36.0 |
| EES07381 | Sorghum | nucleus | 35.18 | 35.29 |
| Zm00001d017804_P001 | Maize | nucleus | 33.88 | 35.25 |
| KRH30960 | Soybean | nucleus | 38.76 | 35.1 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 31.6 | 34.15 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 38.44 | 34.01 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 35.5 | 33.85 |
| EES00435 | Sorghum | nucleus | 31.92 | 33.79 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 30.94 | 33.57 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 31.6 | 33.33 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 30.94 | 32.87 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 30.62 | 32.87 |
| Os01t0111500-01 | Rice | nucleus | 31.27 | 32.54 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 30.62 | 32.53 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 30.94 | 32.31 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 29.97 | 31.51 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 29.32 | 31.47 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 34.53 | 31.27 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 28.66 | 30.88 |
| Zm00001d008444_P001 | Maize | nucleus | 32.57 | 30.77 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 27.36 | 30.55 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 28.99 | 26.89 |
| Os06t0496400-01 | Rice | nucleus | 25.73 | 26.87 |
| AT5G43175.1 | Thale cress | nucleus | 17.26 | 23.77 |
| AT1G27740.1 | Thale cress | nucleus | 18.89 | 22.48 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 12.38 | 22.22 |
| AT5G09750.1 | Thale cress | nucleus | 13.68 | 18.75 |
| AT3G50330.1 | Thale cress | nucleus | 13.68 | 18.18 |
| AT5G67060.1 | Thale cress | nucleus | 14.01 | 17.84 |
| AT2G14760.3 | Thale cress | nucleus | 19.22 | 17.3 |
| AT4G33880.1 | Thale cress | nucleus | 19.54 | 17.05 |
| AT4G00120.1 | Thale cress | nucleus | 10.42 | 16.16 |
| AT3G21330.1 | Thale cress | nucleus | 15.64 | 12.87 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:833758 | UniProt:A0A178UPA1 | ProteinID:AED94234.1 | ArrayExpress:AT5G37800 |
| EnsemblPlantsGene:AT5G37800 | RefSeq:AT5G37800 | TAIR:AT5G37800 | RefSeq:AT5G37800-TAIR-G | EnsemblPlants:AT5G37800.1 | TAIR:AT5G37800.1 |
| ProteinID:BAB10359.1 | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_198596.1 | ProteinID:OAO95618.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF19 | UniProt:Q9FJ00 | Symbol:RSL1 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000016277E | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BHLH86RSL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPA1]
Coordinates
chr5:+:15036066..15037884
Molecular Weight (calculated)
33327.4 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.648
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLINEHCNE RNYISTPNSS EDLSSPQNCG LDEGASASSS STINSDHQNN QGFVFYPSGE TIEDHNSLMD FNASSFFTFD NHRSLISPVT NGGAFPVVDG
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
101: NMSYSYDGWS HHQVDSISPR VIKTPNSFET TSSFGLTSNS MSKPATNHGN GDWLYSGSTI VNIGSRHEST SPKLAGNKRP FTGENTQLSK KPSSGTNGKI
201: KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSSQRDSNST
301: RETSIAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.