Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G276100.1 | Wheat | nucleus | 86.16 | 85.57 |
| EES07381 | Sorghum | nucleus | 66.09 | 62.42 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 25.61 | 61.16 |
| Zm00001d017804_P001 | Maize | nucleus | 62.28 | 61.02 |
| Os02t0710300-01 | Rice | nucleus | 60.55 | 58.33 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 38.06 | 40.15 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 37.37 | 37.89 |
| GSMUA_Achr10P... | Banana | nucleus | 38.06 | 36.91 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 40.14 | 36.02 |
| CDY11694 | Canola | nucleus | 33.22 | 33.1 |
| CDX96145 | Canola | nucleus | 33.22 | 33.1 |
| CDX68049 | Canola | nucleus | 33.22 | 33.1 |
| CDY55674 | Canola | nucleus | 32.87 | 32.76 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 38.41 | 32.74 |
| AT1G66470.1 | Thale cress | nucleus | 33.22 | 32.21 |
| CDY61813 | Canola | nucleus | 33.91 | 32.13 |
| CDY58387 | Canola | nucleus | 33.91 | 31.92 |
| KRH73015 | Soybean | nucleus | 32.53 | 31.86 |
| KRH15121 | Soybean | nucleus | 32.18 | 31.74 |
| Bra019708.1-P | Field mustard | nucleus | 33.56 | 31.6 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 37.02 | 30.84 |
| AT5G37800.1 | Thale cress | nucleus | 32.53 | 30.62 |
| Solyc02g091440.1.1 | Tomato | nucleus | 31.83 | 29.02 |
| PGSC0003DMT400078776 | Potato | nucleus | 31.49 | 28.71 |
| Bra004169.1-P | Field mustard | nucleus | 26.3 | 28.36 |
| KRG97923 | Soybean | nucleus | 33.22 | 28.32 |
| KRH30960 | Soybean | nucleus | 33.22 | 28.32 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 17.99 | 27.96 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 22.15 | 22.07 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 23.18 | 21.47 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 21.11 | 21.11 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 18.34 | 20.87 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 21.11 | 20.2 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 13.84 | 18.87 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 13.84 | 18.18 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 11.07 | 17.88 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 14.19 | 17.45 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 14.19 | 17.45 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 19.72 | 17.33 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 13.15 | 12.14 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 15.57 | 11.66 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 15.92 | 11.65 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 15.57 | 9.64 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G276200.1 | EnsemblPlantsGene:TraesCS6A01G276200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF19 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:503248768..503249709
Molecular Weight (calculated)
30271.5 Da
IEP (calculated)
5.152
GRAVY (calculated)
-0.281
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVREPMVM YDGGFDAEAC AFDVLGYGGH DALLGSVDTA GLYGSYAYAH DEPAGAASAY VPDSASWAGA GPSVLSFGRA ARGHAAQAVA QEEADCDAWM
101: DAMDEDQHAG PASTIGFDPT TGCFSLMQNS GGAGRPFGLL FPSTSNGSPD AVAPARGSSK RSYAARVQDA EPRAAMKPCG ASRKTSKAKP AAPTTTSPKG
201: DPQSLAAKTR REKISERLRT LQELVPNGTK VDMVTMLEKA FSYVKFLQLQ VKVLATDEFW PAQGGTAPEI SQVKEALDAI LSLQRGQLN
101: DAMDEDQHAG PASTIGFDPT TGCFSLMQNS GGAGRPFGLL FPSTSNGSPD AVAPARGSSK RSYAARVQDA EPRAAMKPCG ASRKTSKAKP AAPTTTSPKG
201: DPQSLAAKTR REKISERLRT LQELVPNGTK VDMVTMLEKA FSYVKFLQLQ VKVLATDEFW PAQGGTAPEI SQVKEALDAI LSLQRGQLN
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.