Factsheet for TraesCS2A01G194200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G193700.1	Wheat	nucleus	96.36	96.36
TraesCS2B01G212700.1	Wheat	nucleus	95.36	95.36
HORVU2Hr1G035190.9	Barley	nucleus	93.05	93.98
PGSC0003DMT400030165	Potato	nucleus	24.83	41.21
TraesCS1A01G345200.1	Wheat	nucleus	24.83	40.32
TraesCS5A01G067600.1	Wheat	nucleus	32.45	33.79
TraesCS3A01G440600.1	Wheat	nucleus	28.15	33.46
Solyc12g088380.1.1	Tomato	nucleus	29.8	32.49
TraesCS4A01G047700.1	Wheat	nucleus	34.44	31.61
TraesCS4A01G234500.1	Wheat	nucleus	32.45	31.41
TraesCS5A01G401300.1	Wheat	nucleus	29.8	31.14
Solyc04g077960.1.1	Tomato	nucleus	35.43	30.14
PGSC0003DMT400055446	Potato	nucleus	35.76	29.92
TraesCS6A01G276100.1	Wheat	nucleus	21.19	21.99
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	19.87	21.9
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	20.2	21.11
TraesCS7A01G262600.1	Wheat	nucleus	14.24	19.55
TraesCS7A01G229900.1	Wheat	nucleus	18.21	19.3
TraesCS7A01G169700.1	Wheat	cytosol	11.26	18.99
TraesCS5A01G237500.1	Wheat	nucleus	13.91	17.87
TraesCS6A01G142000.1	Wheat	nucleus	13.58	17.45
TraesCS3A01G350600.1	Wheat	nucleus	11.92	16.98
TraesCS7A01G323000.1	Wheat	nucleus	12.91	12.46
TraesCS1A01G362800.1	Wheat	nucleus	16.23	12.41
TraesCS3A01G252200.1	Wheat	nucleus	14.57	11.4
TraesCS3A01G207300.2	Wheat	extracellular	14.24	9.21

Protein Annotations

EnsemblPlants:TraesCS2A01G194200.1	EnsemblPlantsGene:TraesCS2A01G194200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:162291446..162292757

Molecular Weight (calculated)

33032.2 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.659

Length

302 amino acids

Sequence
(BLAST)

001: MESSYSSAMP METDTMSQFL GGDHHCFAYE QQDESMEAMA AMFLPALDTD SNSSSSCLNY EVSPQCWPQP QPQPGHSSSV TSFLDPGHGY ESFEFPVMDP
101: FPHSEFQSHC TDIPYLGGGG EDLSPLDSNC APAAGEEAAN DHIPVTNKRK SRAATTASKK AKKAGKKDFT SNDIEGDDTY VIDPQSSSSC TSEDGDLDGN
201: TKSSSKKTGT RASRGAATDP QSLYARKRRE RINERLKTLQ NLVPNGTKVD ISTMLEEAVE YVKFMQLQIK LLSSDDMWMY APLAYNGINV SSLEMHIAAL
301: QK

Best Arabidopsis Sequence Match ( AT1G27740.1 )
(BLAST)

001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM

Arabidopsis Description

BHLH54Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.