Factsheet for TraesCS4A01G234500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G079500.1	Wheat	nucleus	97.44	97.12
TraesCS4B01G080700.1	Wheat	nucleus	96.79	96.79
EER91225	Sorghum	nucleus	69.55	72.33
TraesCS5A01G067600.1	Wheat	nucleus	55.77	60.0
TraesCS1A01G345200.1	Wheat	nucleus	26.92	45.16
PGSC0003DMT400030165	Potato	nucleus	23.72	40.66
TraesCS3A01G440600.1	Wheat	nucleus	29.17	35.83
TraesCS4A01G047700.1	Wheat	nucleus	35.9	34.04
TraesCS2A01G194200.1	Wheat	nucleus	31.41	32.45
Solyc04g077960.1.1	Tomato	nucleus	36.54	32.11
PGSC0003DMT400055446	Potato	nucleus	36.86	31.86
TraesCS5A01G401300.1	Wheat	nucleus	29.49	31.83
Solyc12g088380.1.1	Tomato	nucleus	27.56	31.05
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	22.12	25.18
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	21.47	23.18
TraesCS6A01G276100.1	Wheat	nucleus	21.15	22.68
TraesCS7A01G262600.1	Wheat	nucleus	14.1	20.0
TraesCS5A01G237500.1	Wheat	nucleus	14.42	19.15
TraesCS6A01G142000.1	Wheat	nucleus	14.42	19.15
TraesCS7A01G229900.1	Wheat	nucleus	16.99	18.6
TraesCS7A01G169700.1	Wheat	cytosol	10.58	18.44
TraesCS3A01G350600.1	Wheat	nucleus	10.9	16.04
TraesCS7A01G323000.1	Wheat	nucleus	13.14	13.1
TraesCS1A01G362800.1	Wheat	nucleus	16.35	12.91
TraesCS3A01G252200.1	Wheat	nucleus	15.06	12.18
TraesCS3A01G207300.2	Wheat	extracellular	13.14	8.78

Protein Annotations

EnsemblPlants:TraesCS4A01G234500.1	EnsemblPlantsGene:TraesCS4A01G234500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF47	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:543374607..543375910

Molecular Weight (calculated)

33937.3 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.648

Length

312 amino acids

Sequence
(BLAST)

001: MESGGVITEA GWDSLGLTSQ AEESEMMEQL LGTFPSNGEE EHQELPWSVQ ATHAYYAHCN GSSNAYSSAS SNSVGSLVLD MPSDYGGFYL GDSNGIGSCT
101: AALDLNMVQE QGAAQFMDAI FNPSYGNGDS SCDDLGDSSM NLLDSIDTSN KRKCQDQGKI ADQTSGRKYS RKADSKRTKK AMQCEGDDGT TTDTNKQSLS
201: CCTSEIDSNA SQEPPVASKP KSKAQAGRQT TDPQSLYARK RREKINERLK VLQNLVPNGT KVDISTMLEE AVEYVKFLQL QIKLLSSDEM WMYAPIAYNG
301: MNIGIDLNLS QH

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.