Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077960.1.1 | Tomato | nucleus | 93.91 | 95.49 |
| PGSC0003DMT400030165 | Potato | nucleus | 30.75 | 60.99 |
| PGSC0003DMT400008370 | Potato | nucleus | 26.04 | 47.47 |
| PGSC0003DMT400089728 | Potato | nucleus | 35.18 | 41.64 |
| PGSC0003DMT400087143 | Potato | nucleus | 37.95 | 41.14 |
| TraesCS5D01G078800.1 | Wheat | nucleus | 30.19 | 37.72 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 29.64 | 36.9 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 31.86 | 36.86 |
| TraesCS4D01G079500.1 | Wheat | nucleus | 31.58 | 36.42 |
| EER91225 | Sorghum | nucleus | 30.19 | 36.33 |
| TraesCS4B01G080700.1 | Wheat | nucleus | 31.3 | 36.22 |
| TraesCS5B01G074500.1 | Wheat | nucleus | 29.09 | 36.21 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 29.92 | 36.12 |
| Os12t0589000-00 | Rice | nucleus | 30.19 | 35.86 |
| TraesCS2D01G193700.1 | Wheat | nucleus | 29.92 | 35.76 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 29.92 | 35.76 |
| TraesCS2B01G212700.1 | Wheat | nucleus | 29.64 | 35.43 |
| EES17296 | Sorghum | nucleus | 30.19 | 34.49 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 26.59 | 30.77 |
| Zm00001d041351_P001 | Maize | nucleus | 24.1 | 28.62 |
| PGSC0003DMT400048857 | Potato | nucleus | 11.63 | 28.38 |
| PGSC0003DMT400010344 | Potato | nucleus | 13.02 | 20.98 |
| PGSC0003DMT400020558 | Potato | nucleus | 14.68 | 20.95 |
| PGSC0003DMT400078776 | Potato | nucleus | 17.17 | 19.56 |
| PGSC0003DMT400073760 | Potato | nucleus | 12.47 | 17.18 |
| PGSC0003DMT400012487 | Potato | nucleus | 17.73 | 16.41 |
| PGSC0003DMT400006453 | Potato | nucleus | 16.62 | 15.54 |
Protein Annotations
| EntrezGene:102600435 | MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1BXX5 | PFAM:PF00010 |
| EnsemblPlantsGene:PGSC0003DMG400021526 | PGSC:PGSC0003DMG400021526 | EnsemblPlants:PGSC0003DMT400055446 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002966906 | RefSeq:XP_015158284.1 | InterPro:bHLH_dom | SEG:seg |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400021526]
Coordinates
chr4:-:67151437..67153129
Molecular Weight (calculated)
40556.9 Da
IEP (calculated)
4.689
GRAVY (calculated)
-0.864
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHVGAFFDE EWESLSKLFS STETADFMLQ LQGDLGSLFS MNGSDNAGSS YGTDNPQVAF SQLSDEANNN FQYFSQESSI TSCGSDHGKF FTNPSHEHLQ
101: HSNNIDDVNN QLLQVAINNN LPDEYQSIDF FDMDSKNLEN LCINQDFQAD MTYKDEMVCD QLDNAGISPV SDKEMQLKRK CDKIAPENPK KKSRGSQDAQ
201: KSTKKKAQPK RGKKNQKMTQ INNEEGEEET NNNADNQIAQ SSSCCSSEDD SNASQELNGG TVSSNTKGKS RASRGAATDP QSLYARRRRE RINERLRILQ
301: NLVPNGTKVD ISTMLEEAVT YVKFLQLQIK LLSSDELWMY APLAYHGMDI GIYQKMLPHL Q
101: HSNNIDDVNN QLLQVAINNN LPDEYQSIDF FDMDSKNLEN LCINQDFQAD MTYKDEMVCD QLDNAGISPV SDKEMQLKRK CDKIAPENPK KKSRGSQDAQ
201: KSTKKKAQPK RGKKNQKMTQ INNEEGEEET NNNADNQIAQ SSSCCSSEDD SNASQELNGG TVSSNTKGKS RASRGAATDP QSLYARRRRE RINERLRILQ
301: NLVPNGTKVD ISTMLEEAVT YVKFLQLQIK LLSSDELWMY APLAYHGMDI GIYQKMLPHL Q
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.