Factsheet for TraesCS5B01G074500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G067600.1	Wheat	nucleus	93.79	93.79
TraesCS5D01G078800.1	Wheat	nucleus	93.45	93.77
HORVU5Hr1G018100.1	Barley	cytosol, mitochondrion, nucleus	87.59	81.41
Os12t0589000-00	Rice	nucleus	67.59	64.47
EES17296	Sorghum	nucleus	62.76	57.59
TraesCS4B01G080700.1	Wheat	nucleus	59.66	55.45
TraesCS1B01G359000.1	Wheat	nucleus	26.21	40.86
PGSC0003DMT400030165	Potato	nucleus	23.79	37.91
TraesCS3B01G474700.1	Wheat	nucleus	31.38	35.83
TraesCS5B01G406100.1	Wheat	nucleus	33.45	35.27
Zm00001d041351_P001	Maize	nucleus	36.9	35.2
TraesCS2B01G212700.1	Wheat	nucleus	33.45	32.12
TraesCS4B01G257200.1	Wheat	nucleus	36.55	32.02
Solyc04g077960.1.1	Tomato	nucleus	36.55	29.86
PGSC0003DMT400055446	Potato	nucleus	36.21	29.09
Solyc12g088380.1.1	Tomato	nucleus	27.59	28.88
TraesCS3B01G007700.1	Wheat	nucleus	21.38	22.63
TraesCS3B01G010400.1	Wheat	nucleus	21.38	22.63
TraesCS6B01G303500.1	Wheat	nucleus	21.72	22.03
TraesCS6B01G303600.1	Wheat	cytosol, nucleus, plastid	21.03	21.48
TraesCS7B01G160500.1	Wheat	nucleus	14.48	19.0
TraesCS7B01G195800.1	Wheat	nucleus	18.62	18.49
TraesCS7B01G074900.1	Wheat	nucleus	11.38	17.93
TraesCS5B01G235200.1	Wheat	nucleus	14.48	17.87
TraesCS3B01G383000.1	Wheat	nucleus	12.41	16.98
TraesCS3B01G281600.1	Wheat	nucleus	16.9	12.89
TraesCS7B01G223900.1	Wheat	nucleus	14.14	12.77
TraesCS1B01G380000.1	Wheat	nucleus	16.9	12.31
TraesCS3B01G233700.2	Wheat	extracellular, mitochondrion, nucleus, plastid	13.79	8.53

Protein Annotations

EnsemblPlants:TraesCS5B01G074500.1	EnsemblPlantsGene:TraesCS5B01G074500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:88358407..88359665

Molecular Weight (calculated)

31607.9 Da

IEP (calculated)

4.944

GRAVY (calculated)

-0.580

Length

290 amino acids

Sequence
(BLAST)

001: MEAGGLISEA GWTMFDFPPQ GEESDIMAQL LGTFPSHAEE AQQDLPWYQA SHPSYYDSDV HTSACSDSND GSFAVPSECM GYYLGDSSEA LGISSCTVPQ
101: DLNLVQEQGA TEFLNMIPTI SHDLFGKGES SCEGLDSVSA TNKRKHSVEE EINGQARGRK CARKAAPKRA KNAKQTEASC CTSDNDSNAS QESADAGVTP
201: KGKARAGRGA ATDPQSLYAR KRRKRINERL KTLQTLVPNG TKVDMSTMLE EAVQHVKFLQ LQIKVLSSDE MWMYARIAYN GMNIGLDLNM

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.