Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G256600.1 | Wheat | nucleus | 90.14 | 88.58 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 83.1 | 82.52 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 26.76 | 62.81 |
| EES07381 | Sorghum | nucleus | 65.85 | 61.11 |
| Zm00001d017804_P001 | Maize | nucleus | 62.32 | 60.0 |
| Os02t0710300-01 | Rice | nucleus | 62.32 | 59.0 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 37.68 | 39.05 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 37.32 | 38.69 |
| GSMUA_Achr10P... | Banana | nucleus | 39.79 | 37.92 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 41.55 | 36.65 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 36.97 | 35.96 |
| CDY11694 | Canola | nucleus | 34.51 | 33.79 |
| CDX96145 | Canola | nucleus | 34.51 | 33.79 |
| CDX68049 | Canola | nucleus | 34.51 | 33.79 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 40.14 | 33.63 |
| CDY55674 | Canola | nucleus | 34.15 | 33.45 |
| AT1G66470.1 | Thale cress | nucleus | 34.15 | 32.55 |
| CDY61813 | Canola | nucleus | 34.86 | 32.46 |
| CDY58387 | Canola | nucleus | 34.86 | 32.25 |
| Bra019708.1-P | Field mustard | nucleus | 34.51 | 31.92 |
| AT5G37800.1 | Thale cress | nucleus | 34.15 | 31.6 |
| KRH15121 | Soybean | nucleus | 32.39 | 31.4 |
| KRH73015 | Soybean | nucleus | 32.39 | 31.19 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 37.68 | 30.84 |
| Bra004169.1-P | Field mustard | nucleus | 27.46 | 29.1 |
| Solyc02g091440.1.1 | Tomato | nucleus | 32.04 | 28.71 |
| PGSC0003DMT400078776 | Potato | nucleus | 31.69 | 28.39 |
| KRH30960 | Soybean | nucleus | 33.8 | 28.32 |
| KRG97923 | Soybean | nucleus | 33.45 | 28.02 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 17.96 | 27.42 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 21.48 | 22.18 |
| TraesCS2B01G212700.1 | Wheat | nucleus | 22.54 | 21.19 |
| TraesCS5B01G074500.1 | Wheat | nucleus | 21.48 | 21.03 |
| TraesCS4B01G080700.1 | Wheat | nucleus | 22.89 | 20.83 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 18.31 | 20.47 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 13.73 | 18.4 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 13.38 | 17.19 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 10.92 | 16.85 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 19.37 | 16.62 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 13.73 | 16.6 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 16.2 | 12.11 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 16.2 | 11.56 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 13.03 | 11.53 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 14.44 | 8.74 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G303600.1 | EnsemblPlantsGene:TraesCS6B01G303600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF19 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 | TIGR:cd00083 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:544092118..544093056
Molecular Weight (calculated)
29811.0 Da
IEP (calculated)
5.804
GRAVY (calculated)
-0.351
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVREPMVT YDGGFDALVY GGHDALLGGV DTTVLFGGYN YAHDEPAGAA GAYVPESASW AGAGMSVLAF DRAAPARGPG AQVVAQEEAD CDAWMDAMDE
101: DQHAGPASTI GFDPATGCFS LMQSSGGAGR PFGLLFPSTS NGSPDAPAPA RGSSKRSYAA RVQDAEPRAS KKPCGARRKT SKAKPAARTT TSPKGDPQSL
201: AAKNRREKIS ERLRTLQELV PNGTKVDMVT MLEKAVSYVK FLQLQVKVLA TDEFWPAQGG TAPEISQVKE ALDAILSSQR GQLD
101: DQHAGPASTI GFDPATGCFS LMQSSGGAGR PFGLLFPSTS NGSPDAPAPA RGSSKRSYAA RVQDAEPRAS KKPCGARRKT SKAKPAARTT TSPKGDPQSL
201: AAKNRREKIS ERLRTLQELV PNGTKVDMVT MLEKAVSYVK FLQLQVKVLA TDEFWPAQGG TAPEISQVKE ALDAILSSQR GQLD
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.