Factsheet for GSMUA_Achr10P20230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P26350_001
GSMUA_Achr4P30070_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66470.1	GSMUA_Achr4P26350_001	AT5G47100.1	21798944
AT1G66470.1	GSMUA_Achr4P30070_001	AT5G47100.1	21798944
AT1G66470.1	GSMUA_AchrUn_...	AT5G47100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	32.55	80.17
GSMUA_Achr6P09370_001	Banana	nucleus	70.81	62.24
GSMUA_Achr2P22860_001	Banana	nucleus	63.76	59.01
TraesCS3B01G007700.1	Wheat	nucleus	39.6	43.07
TraesCS3B01G010400.1	Wheat	nucleus	39.6	43.07
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	39.26	42.7
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	39.26	42.55
Os02t0710300-01	Rice	nucleus	41.61	41.33
Zm00001d017804_P001	Maize	nucleus	40.27	40.68
EES07381	Sorghum	nucleus	40.94	39.87
TraesCS6B01G303600.1	Wheat	cytosol, nucleus, plastid	37.92	39.79
TraesCS6A01G276100.1	Wheat	nucleus	37.92	38.83
TraesCS6D01G256600.1	Wheat	nucleus	37.58	38.75
KRH15121	Soybean	nucleus	37.92	38.57
TraesCS6D01G256500.1	Wheat	cytosol	36.24	38.16
TraesCS6B01G303500.1	Wheat	nucleus	36.58	38.11
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	36.91	38.06
EES00435	Sorghum	nucleus	36.91	37.93
GSMUA_Achr4P23240_001	Banana	nucleus	18.46	37.67
CDY55674	Canola	nucleus	36.58	37.59
CDY11694	Canola	nucleus	36.58	37.59
CDX96145	Canola	nucleus	36.58	37.59
CDX68049	Canola	nucleus	36.58	37.59
TraesCS6D01G256300.1	Wheat	nucleus	36.91	37.41
KRH73015	Soybean	nucleus	36.91	37.29
VIT_14s0006g01470.t01	Wine grape	nucleus	43.29	37.18
KRH30960	Soybean	nucleus	41.61	36.58
KRG97923	Soybean	nucleus	41.61	36.58
AT1G66470.1	Thale cress	nucleus	36.24	36.24
GSMUA_Achr6P16890_001	Banana	nucleus	16.44	36.03
PGSC0003DMT400078776	Potato	nucleus	38.26	35.96
Os01t0111500-01	Rice	nucleus	35.23	35.59
AT5G37800.1	Thale cress	nucleus	36.58	35.5
Solyc02g091440.1.1	Tomato	nucleus	37.58	35.33
TraesCS6D01G256400.1	Wheat	nucleus	32.55	35.27
CDY61813	Canola	nucleus	35.57	34.75
Bra019708.1-P	Field mustard	nucleus	35.23	34.2
CDY58387	Canola	nucleus	35.23	34.2
Zm00001d008444_P001	Maize	nucleus	36.24	33.23
TraesCS7A01G229900.1	Wheat	nucleus	30.87	32.28
TraesCS7B01G195800.1	Wheat	nucleus	31.54	32.19
TraesCS7D01G230600.1	Wheat	nucleus	30.87	32.17
Bra004169.1-P	Field mustard	nucleus	28.86	32.09
GSMUA_Achr6P18580_001	Banana	cytosol	13.09	31.97
HORVU7Hr1G046580.1	Barley	plasma membrane, vacuole	32.55	29.31
Os06t0496400-01	Rice	nucleus	26.17	26.53
GSMUA_Achr1P14400_001	Banana	nucleus	13.76	24.55
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	13.76	24.4
GSMUA_Achr8P23350_001	Banana	nucleus	12.42	23.87
GSMUA_Achr9P09600_001	Banana	nucleus	21.81	23.55
GSMUA_Achr9P29130_001	Banana	nucleus	11.74	22.88
GSMUA_AchrUn_...	Banana	nucleus	21.81	21.74
GSMUA_Achr5P01290_001	Banana	nucleus	14.09	21.21
GSMUA_Achr2P17130_001	Banana	nucleus	22.48	21.2
GSMUA_Achr6P07760_001	Banana	nucleus	20.13	20.91
GSMUA_Achr11P...	Banana	nucleus	13.09	20.42
GSMUA_Achr3P18870_001	Banana	nucleus	22.82	19.65
GSMUA_Achr4P18820_001	Banana	nucleus	12.75	18.54
GSMUA_Achr10P...	Banana	nucleus	13.76	16.94
GSMUA_Achr9P15380_001	Banana	nucleus	13.76	16.73
GSMUA_AchrUn_...	Banana	nucleus	13.76	15.02
GSMUA_Achr3P25950_001	Banana	nucleus	15.44	13.07
GSMUA_Achr8P24970_001	Banana	nucleus	14.09	12.07

Protein Annotations

EnsemblPlants:GSMUA_Achr10P20230_001	EnsemblPlants:GSMUA_Achr10T20230_001	EnsemblPlantsGene:GSMUA_Achr10G20230_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF19	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002969B19	UniProt:M0RJU8	MapMan:15.5.32	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_6.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G20230_001]

Coordinates

chr10:-:26308229..26309643

Molecular Weight (calculated)

32615.1 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.618

Length

298 amino acids

Sequence
(BLAST)

001: MMLSQEESSD SLGRYSSTLL PFMSDPSSSS SSAYVLGAVN SPPQEALSFL DCKAAASEHW AYSNASVLSF EQGDHTSGAG YLSLDHEDEC DAWVAAMDQN
101: YQLRPPDVKR RAAADRSTLI HERDSFEVES GYGSVRAPVK DKRQGQVRFG LVYPGAAAAV DGRQESIGRA TVLQKRRHTD ACDVPSPRKQ CGSTGKTKDK
201: SSPTKDPQSI AAKNRRERIS ERLKILQDLV PNGTKVDLVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGG KNPDVGQVKE AVDAILSSQR ERKSSSKQ

Best Arabidopsis Sequence Match ( AT1G66470.1 )
(BLAST)

001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN

Arabidopsis Description

BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.