Factsheet for Bra019708.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000276.1-P
Bra004712.1-P
Bra016854.1-P
Bra017504.1-P
Bra022104.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66470.1	Bra000276.1-P	AT2G42870.1	21798944
AT1G66470.1	Bra004712.1-P	AT2G42870.1	21798944
AT1G66470.1	Bra016854.1-P	AT2G42870.1	21798944
AT1G66470.1	Bra017504.1-P	AT5G47100.1	21798944
AT1G66470.1	Bra022104.1-P	AT5G47100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58387	Canola	nucleus	99.02	99.02
CDY61813	Canola	nucleus	97.07	97.7
AT1G66470.1	Thale cress	nucleus	82.41	84.9
Bra004169.1-P	Field mustard	nucleus	73.94	84.7
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	26.71	67.77
AT5G37800.1	Thale cress	nucleus	65.8	65.8
KRH73015	Soybean	nucleus	39.41	41.02
KRH15121	Soybean	nucleus	39.09	40.96
Solyc02g091440.1.1	Tomato	nucleus	39.74	38.49
Os02t0710300-01	Rice	nucleus	36.81	37.67
PGSC0003DMT400078776	Potato	nucleus	38.76	37.54
TraesCS3B01G007700.1	Wheat	nucleus	32.25	36.13
TraesCS3B01G010400.1	Wheat	nucleus	32.25	36.13
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	31.92	35.77
KRG97923	Soybean	nucleus	39.41	35.69
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	31.92	35.64
Zm00001d017804_P001	Maize	nucleus	33.88	35.25
GSMUA_Achr10P...	Banana	nucleus	34.2	35.23
VIT_14s0006g01470.t01	Wine grape	nucleus	39.74	35.16
KRH30960	Soybean	nucleus	38.76	35.1
EES07381	Sorghum	nucleus	34.53	34.64
TraesCS6B01G303600.1	Wheat	cytosol, nucleus, plastid	31.92	34.51
TraesCS6D01G256500.1	Wheat	cytosol	31.6	34.28
TraesCS6D01G256600.1	Wheat	nucleus	31.92	33.91
TraesCS7B01G195800.1	Wheat	nucleus	32.25	33.9
TraesCS7A01G229900.1	Wheat	nucleus	31.27	33.68
TraesCS6A01G276100.1	Wheat	nucleus	31.92	33.68
TraesCS7D01G230600.1	Wheat	nucleus	31.27	33.57
TraesCS6B01G303500.1	Wheat	nucleus	31.27	33.57
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	31.6	33.56
GSMUA_Achr2P22860_001	Banana	nucleus	34.85	33.23
EES00435	Sorghum	nucleus	31.27	33.1
TraesCS6D01G256300.1	Wheat	nucleus	31.6	32.99
TraesCS6D01G256400.1	Wheat	nucleus	28.34	31.64
GSMUA_Achr6P09370_001	Banana	nucleus	34.53	31.27
Os01t0111500-01	Rice	nucleus	29.64	30.85
Zm00001d008444_P001	Maize	nucleus	32.25	30.46
HORVU7Hr1G046580.1	Barley	plasma membrane, vacuole	31.27	29.0
Os06t0496400-01	Rice	nucleus	25.73	26.87
Bra010921.1-P	Field mustard	nucleus	19.54	23.44
Bra028895.1-P	Field mustard	nucleus, plastid	13.36	23.16
Bra032846.1-P	Field mustard	nucleus	18.24	22.95
Bra030063.1-P	Field mustard	nucleus	18.89	22.75
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	14.66	21.95
Bra036071.1-P	Field mustard	nucleus	14.01	20.19
Bra012128.1-P	Field mustard	nucleus	14.01	19.63
Bra028620.1-P	Field mustard	nucleus	13.68	19.63
Bra030002.1-P	Field mustard	nucleus	14.33	19.13
Bra036801.1-P	Field mustard	nucleus	14.33	19.05
Bra034587.1-P	Field mustard	nucleus	19.54	17.34
Bra039819.1-P	Field mustard	nucleus	19.22	17.05
Bra011476.1-P	Field mustard	nucleus	19.22	17.0
Bra036969.1-P	Field mustard	nucleus	19.22	16.86
Bra000979.1-P	Field mustard	cytosol	10.1	16.76
Bra031275.1-P	Field mustard	nucleus	14.66	13.55
Bra001826.1-P	Field mustard	nucleus	14.01	13.27

Protein Annotations

EnsemblPlants:Bra019708.1	EnsemblPlants:Bra019708.1-P	EnsemblPlantsGene:Bra019708	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF19	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000253EDF1	UniProt:M4DT65	MapMan:15.5.32	:	:

Description

AT1G66470 (E=3e-111) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA06:-:4867166..4868541

Molecular Weight (calculated)

33336.3 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.837

Length

307 amino acids

Sequence
(BLAST)

001: MALVNNHPNE AKYVSKQNSS SQDLSSPENY GLDQPDAAYA GGGGHSASSS STMNSDQQQN HQGIVFYPSG ESVEDHNSLL DFNGSSFLNF DHNDDRHESF
101: PPPTVSCGGV SGGFSFLEGN NMSYSFTNWN QHHMDIIGPR HIETPGTNQV HKDWSYSDST VVTTGSRHKS VSPKSTGNKR SYTGESSQPP SKKPTSGAKG
201: KAKPKPTTSP KDPQSLAAKN RRERISERLK ILQELVPNGT KVDLVTMLEK AISYVKFLQV QVKVLAADEF WPAQGGKAPD ISQVKDAIDA ILSSSQRGRN
301: SDPVTNQ

Best Arabidopsis Sequence Match ( AT1G66470.1 )
(BLAST)

001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN

Arabidopsis Description

BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.