Factsheet for Bra016854.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000317.1-P
Bra000979.1-P
Bra004879.1-P
Bra010667.1-P
Bra011841.1-P
Bra012133.1-P
Bra023825.1-P
Bra030002.1-P
Bra036071.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42870.1	Bra000317.1-P	AT2G43650.1	21798944
AT2G42870.1	Bra004879.1-P	AT2G44950.1	21798944
AT2G42870.1	Bra040332.1-P	AT2G44950.1	21798944
AT2G42870.1	Bra023825.1-P	AT3G22440.1	21798944
AT2G42870.1	Bra030002.1-P	AT3G50330.1	21798944
AT2G42870.1	Bra036071.1-P	AT3G50330.1	21798944
AT2G42870.1	Bra000979.1-P	AT4G00120.1	21798944
AT2G42870.1	Bra010667.1-P	AT4G39690.1	21798944
AT2G42870.1	Bra011841.1-P	AT4G39690.1	21798944
AT2G42870.1	Bra012133.1-P	AT5G67110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14860	Canola	plastid	100.0	100.0
Bra000276.1-P	Field mustard	plastid	91.38	91.38
Bra004712.1-P	Field mustard	plastid	88.79	88.79
AT2G42870.1	Thale cress	plastid	78.45	77.12
Bra014551.1-P	Field mustard	plastid	66.38	66.38
Bra007422.1-P	Field mustard	plastid	61.21	61.21
Solyc07g056360.1.1	Tomato	nucleus	43.97	49.04
PGSC0003DMT400044708	Potato	cytosol	42.24	44.95
KRH73670	Soybean	plastid	40.52	36.43
KRH14475	Soybean	nucleus	41.38	34.53
VIT_12s0142g00160.t01	Wine grape	mitochondrion	37.07	28.48

Protein Annotations

EnsemblPlants:Bra016854.1	EnsemblPlants:Bra016854.1-P	EnsemblPlantsGene:Bra016854	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	PANTHER:PTHR33124	PANTHER:PTHR33124:SF3	SEG:seg	UniParc:UPI0001CAAF10	UniProt:M4DK26
MapMan:15.5.32	:	:	:	:	:

Description

AT2G42870 (E=9e-030) PAR1, HLH1 | PAR1 (PHY RAPIDLY REGULATED 1)

Coordinates

chrA04:-:17885989..17886339

Molecular Weight (calculated)

12672.1 Da

IEP (calculated)

6.663

GRAVY (calculated)

-0.471

Length

116 amino acids

Sequence
(BLAST)

001: MEKTLATPDN ARSLSPSSSA AVKSRTGGFE RRTKRRLSQT KASVCVSGQE EDDEEEVKEK IEALQRIIPG GTALGVDALF EETAGYIMSL QCQIKTIKVL
101: TSFIQSLDKQ DMKFGG

Best Arabidopsis Sequence Match ( AT2G42870.1 )
(BLAST)

001: MEETLATPDA TRRSLSPSCS ATVKSRAAGF ERRTKRRLSE TNASVREDRE EAEEEEDEVK EKIEALQRII PGGAALGVDA LFEETAGYIL SLQCQIKTIK
101: VLTSFLQRID QEDMKFGG

Arabidopsis Description

PAR1Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.