Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010591.1-P | |
| Bra011740.1-P | |
| Bra030002.1-P | |
| Bra036071.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | Bra030002.1-P | AT3G50330.1 | 21798944 |
| AT3G50330.1 | Bra036071.1-P | AT3G50330.1 | 21798944 |
| AT3G50330.1 | Bra010591.1-P | AT4G36930.1 | 17855426 |
| AT3G50330.1 | Bra011740.1-P | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83121 | Canola | nucleus | 100.0 | 100.0 |
| CDX68583 | Canola | nucleus | 96.09 | 97.36 |
| Bra036071.1-P | Field mustard | nucleus | 81.3 | 87.79 |
| AT3G50330.1 | Thale cress | nucleus | 87.83 | 87.45 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 64.78 | 72.68 |
| Solyc12g088790.1.1 | Tomato | nucleus | 36.96 | 70.25 |
| Bra036801.1-P | Field mustard | nucleus | 69.57 | 69.26 |
| Bra012128.1-P | Field mustard | nucleus | 63.04 | 66.21 |
| PGSC0003DMT400048857 | Potato | nucleus | 36.09 | 56.08 |
| KRH28464 | Soybean | nucleus | 51.74 | 49.17 |
| KRH77007 | Soybean | nucleus | 51.3 | 47.01 |
| PGSC0003DMT400010344 | Potato | nucleus | 44.78 | 45.98 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 42.17 | 44.09 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 42.17 | 43.69 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 41.74 | 43.64 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 41.3 | 42.99 |
| KRH57944 | Soybean | nucleus | 46.52 | 42.13 |
| KRH04603 | Soybean | nucleus | 50.0 | 40.78 |
| Zm00001d050016_P001 | Maize | nucleus | 41.74 | 39.83 |
| Os09t0455300-01 | Rice | nucleus | 40.87 | 39.83 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 40.87 | 38.37 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 39.13 | 38.3 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 39.13 | 38.3 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 39.57 | 38.24 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 38.7 | 37.87 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 38.7 | 37.87 |
| Bra000979.1-P | Field mustard | cytosol | 30.0 | 37.3 |
| Zm00001d020705_P001 | Maize | nucleus | 39.13 | 37.19 |
| Zm00001d031781_P001 | Maize | nucleus | 40.43 | 37.05 |
| EES15124 | Sorghum | nucleus | 42.61 | 36.43 |
| EER96848 | Sorghum | nucleus | 40.0 | 35.25 |
| Zm00001d005841_P001 | Maize | nucleus | 36.96 | 35.12 |
| Bra028620.1-P | Field mustard | nucleus | 32.17 | 34.58 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 20.0 | 25.99 |
| Bra031275.1-P | Field mustard | nucleus | 32.17 | 22.29 |
| Bra001826.1-P | Field mustard | nucleus | 31.3 | 22.22 |
| Bra030063.1-P | Field mustard | nucleus | 20.0 | 18.04 |
| Bra032846.1-P | Field mustard | nucleus | 19.13 | 18.03 |
| Bra010921.1-P | Field mustard | nucleus | 19.13 | 17.19 |
| Bra019708.1-P | Field mustard | nucleus | 19.13 | 14.33 |
| Bra034587.1-P | Field mustard | nucleus | 19.57 | 13.01 |
| Bra036969.1-P | Field mustard | nucleus | 19.13 | 12.57 |
| Bra011476.1-P | Field mustard | nucleus | 18.7 | 12.39 |
| Bra004169.1-P | Field mustard | nucleus | 13.91 | 11.94 |
| Bra039819.1-P | Field mustard | nucleus | 16.96 | 11.27 |
Protein Annotations
| EnsemblPlants:Bra030002.1 | EnsemblPlants:Bra030002.1-P | EnsemblPlantsGene:Bra030002 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002544519 | UniProt:M4EMI2 | MapMan:15.5.32 | : |
Description
AT3G50330 (E=2e-079) HEC2 | HEC2 (HECATE 2); DNA binding / transcription factor
Coordinates
chrA01:-:15629422..15630114
Molecular Weight (calculated)
25655.0 Da
IEP (calculated)
10.043
GRAVY (calculated)
-0.597
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSDMLMNM MMQQMEKLPD HFSNPNPNPN SHNIMMLSES NTHPFFFNPN HIHLPLLDPT ITHHHHQPGL NFRYAPSTSS SLPDKRGGGG GDNANMAAMR
101: EMIFRIAVMQ PIHIDPESVK PPKRKNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQSLEEHAV VNGGGVASAP
201: ACVGGGYGGK SCGTMRSDHH QMLGNTQILR
101: EMIFRIAVMQ PIHIDPESVK PPKRKNVRIS KDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQSLEEHAV VNGGGVASAP
201: ACVGGGYGGK SCGTMRSDHH QMLGNTQILR
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.