Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G263400.1 | Wheat | nucleus | 94.57 | 95.0 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 94.12 | 94.55 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 90.95 | 90.54 |
| Solyc12g088790.1.1 | Tomato | nucleus | 35.29 | 64.46 |
| Zm00001d050016_P001 | Maize | nucleus | 68.33 | 62.66 |
| EES15124 | Sorghum | nucleus | 72.4 | 59.48 |
| Zm00001d031781_P001 | Maize | nucleus | 63.8 | 56.18 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 57.01 | 53.62 |
| PGSC0003DMT400048857 | Potato | nucleus | 34.39 | 51.35 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 51.13 | 46.12 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 42.08 | 45.37 |
| CDY18636 | Canola | nucleus | 42.08 | 45.37 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 42.08 | 44.93 |
| CDY30593 | Canola | nucleus | 42.08 | 43.66 |
| Bra036071.1-P | Field mustard | nucleus | 42.08 | 43.66 |
| CDY43559 | Canola | nucleus | 44.34 | 42.42 |
| CDY63952 | Canola | nucleus | 44.34 | 42.42 |
| Bra036801.1-P | Field mustard | nucleus | 44.34 | 42.42 |
| CDY12799 | Canola | nucleus | 41.63 | 42.2 |
| CDX68583 | Canola | nucleus | 42.53 | 41.41 |
| CDX83121 | Canola | nucleus | 42.99 | 41.3 |
| Bra030002.1-P | Field mustard | nucleus | 42.99 | 41.3 |
| AT3G50330.1 | Thale cress | nucleus | 42.99 | 41.13 |
| CDY01443 | Canola | nucleus | 40.72 | 41.1 |
| Bra012128.1-P | Field mustard | nucleus | 40.72 | 41.1 |
| CDY17765 | Canola | nucleus | 41.63 | 40.71 |
| AT5G67060.1 | Thale cress | nucleus | 43.44 | 39.83 |
| PGSC0003DMT400010344 | Potato | nucleus | 39.82 | 39.29 |
| KRH28464 | Soybean | nucleus | 42.08 | 38.43 |
| KRH77007 | Soybean | nucleus | 42.99 | 37.85 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 30.32 | 36.41 |
| KRH57944 | Soybean | nucleus | 40.72 | 35.43 |
| KRH04603 | Soybean | nucleus | 42.53 | 33.33 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 37.1 | 25.55 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 23.53 | 24.53 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 15.84 | 18.82 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 30.32 | 17.63 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 28.96 | 16.08 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 17.65 | 15.35 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 19.0 | 14.69 |
| TraesCS2B01G212700.1 | Wheat | nucleus | 19.91 | 14.57 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 18.1 | 14.55 |
| TraesCS5B01G074500.1 | Wheat | nucleus | 19.0 | 14.48 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 30.32 | 14.29 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 17.65 | 14.23 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 17.65 | 14.23 |
| TraesCS4B01G080700.1 | Wheat | nucleus | 19.91 | 14.1 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 17.19 | 13.38 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 17.65 | 13.36 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 18.1 | 12.08 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G160500.1 | EnsemblPlantsGene:TraesCS7B01G160500 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:218975799..218976464
Molecular Weight (calculated)
24057.4 Da
IEP (calculated)
9.021
GRAVY (calculated)
-0.581
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDTLNSHP EAQLELMNAM LQLEQLTAFP DHAMPVPPSP CTQAPRHQFS SAPHMASANA GGAYHDPYSS QLPNSAPYNG GHRRSEYTAT SQPQPDGAGT
101: TGPAAMREMI FRIAALQPVN IDPDTVRPPK RRNVHISTDP QSVAARMRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKTQVQ SLERAAAANG
201: HRASPNGAAP AAAYQGLNGT W
101: TGPAAMREMI FRIAALQPVN IDPDTVRPPK RRNVHISTDP QSVAARMRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH YVKFLKTQVQ SLERAAAANG
201: HRASPNGAAP AAAYQGLNGT W
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.