Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G362800.1 | Wheat | nucleus | 92.96 | 93.67 |
| TraesCS1D01G367700.1 | Wheat | nucleus | 90.95 | 90.27 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 85.93 | 85.5 |
| Os05t0541400-00 | Rice | nucleus | 51.76 | 49.52 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 20.6 | 49.1 |
| EES18589 | Sorghum | nucleus | 44.22 | 43.89 |
| Zm00001d038863_P001 | Maize | nucleus | 42.46 | 42.68 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 37.94 | 39.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.38 | 38.46 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 13.82 | 29.89 |
| CDY62045 | Canola | nucleus | 25.13 | 29.85 |
| CDY51449 | Canola | nucleus | 24.87 | 29.82 |
| Bra031275.1-P | Field mustard | nucleus | 24.87 | 29.82 |
| Bra001826.1-P | Field mustard | nucleus | 23.87 | 29.32 |
| CDY32423 | Canola | nucleus | 24.12 | 29.09 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 16.08 | 28.96 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 16.58 | 28.09 |
| CDY48884 | Canola | nucleus | 23.37 | 27.76 |
| PGSC0003DMT400006453 | Potato | nucleus | 25.63 | 26.42 |
| Solyc03g121240.1.1 | Tomato | nucleus | 25.13 | 26.32 |
| KRH23349 | Soybean | nucleus | 29.15 | 25.78 |
| AT3G21330.1 | Thale cress | nucleus | 24.12 | 25.74 |
| KRH47179 | Soybean | nucleus | 26.88 | 24.83 |
| KRH09982 | Soybean | nucleus | 27.64 | 24.72 |
| KRH44227 | Soybean | nucleus | 27.14 | 24.38 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 27.89 | 23.67 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 11.06 | 23.66 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 27.39 | 23.14 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 11.56 | 21.7 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 17.09 | 21.18 |
| TraesCS5B01G074500.1 | Wheat | nucleus | 12.31 | 16.9 |
| TraesCS2B01G212700.1 | Wheat | nucleus | 12.81 | 16.89 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 11.56 | 16.73 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 11.56 | 16.2 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 10.3 | 16.14 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 11.56 | 16.08 |
| TraesCS4B01G080700.1 | Wheat | nucleus | 12.56 | 16.03 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 10.8 | 15.69 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 10.8 | 15.69 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 10.55 | 14.38 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 11.31 | 13.6 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0046983 | GO:GO:0048586 | GO:GO:0048587 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF309 | SMART:SM00353 | SUPFAM:SSF47459 |
| EnsemblPlantsGene:TraesCS1B01G380000 | EnsemblPlants:TraesCS1B01G380000.1 | InterPro:bHLH_dom | TIGR:cd00083 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:+:613020679..613022122
Molecular Weight (calculated)
41158.8 Da
IEP (calculated)
7.166
GRAVY (calculated)
-0.470
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAFGWSTQP PVTTVPSCPS DDALLAAFLG AGSFEELRSA GAGDGTVSSD AYHGGLDLPP CQNDLSLLRC QDGVALPGPG HGDTPSNVFL DSAGCFLPAI
101: AGQHDGLHDR FAFVPDDPAH AAGSNTAFSG YSTTTGGGGG GNVSSGESNT YGGGGHDTEV ASPPCAVSRR AQQISQVAPP PTKGNKMPEK LPAAAATTVE
201: ARERWGTNRA PAPTTSITFG NSGGRRGYEP DTEAIAQVKE MIYRAAAMRP LPSLTDAAAG ETPHEPSSSK PRRRKNVRIS SDPQTVAARL RREKVSERLR
301: ALQRLVPGGS KMDTASMLDE AASYLKFLKS QVAALESLGG GGAGGDDDGR YSSVQRYTGR NFNPSSRGIG GAGGTVLSFG RDGVAGYVRS SRNMNMQL
101: AGQHDGLHDR FAFVPDDPAH AAGSNTAFSG YSTTTGGGGG GNVSSGESNT YGGGGHDTEV ASPPCAVSRR AQQISQVAPP PTKGNKMPEK LPAAAATTVE
201: ARERWGTNRA PAPTTSITFG NSGGRRGYEP DTEAIAQVKE MIYRAAAMRP LPSLTDAAAG ETPHEPSSSK PRRRKNVRIS SDPQTVAARL RREKVSERLR
301: ALQRLVPGGS KMDTASMLDE AASYLKFLKS QVAALESLGG GGAGGDDDGR YSSVQRYTGR NFNPSSRGIG GAGGTVLSFG RDGVAGYVRS SRNMNMQL
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.