Factsheet for Os05t0541400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14400_001	Banana	nucleus	22.12	55.09
HORVU1Hr1G079450.1	Barley	nucleus	51.2	53.25
TraesCS1A01G362800.1	Wheat	nucleus	49.52	52.15
TraesCS1B01G380000.1	Wheat	nucleus	49.52	51.76
TraesCS1D01G367700.1	Wheat	nucleus	49.76	51.62
EES18589	Sorghum	nucleus	43.03	44.64
GSMUA_AchrUn_...	Banana	nucleus	28.85	43.96
Zm00001d038863_P001	Maize	nucleus	40.87	42.93
Os01t0707500-01	Rice	nucleus	39.66	41.98
CDY32423	Canola	nucleus	24.76	31.21
Bra001826.1-P	Field mustard	nucleus	24.28	31.17
CDY62045	Canola	nucleus	25.0	31.04
CDY51449	Canola	nucleus	24.76	31.02
Bra031275.1-P	Field mustard	nucleus	24.76	31.02
Os09t0455300-01	Rice	nucleus	17.07	30.08
CDY48884	Canola	nucleus	24.04	29.85
PGSC0003DMT400006453	Potato	nucleus	27.4	29.53
Solyc03g121240.1.1	Tomato	nucleus	26.68	29.21
Os01t0566800-00	Rice	nucleus	32.69	29.18
AT3G21330.1	Thale cress	nucleus	23.8	26.54
KRH23349	Soybean	nucleus	26.68	24.67
VIT_09s0002g02700.t01	Wine grape	nucleus	27.64	24.42
KRH09982	Soybean	nucleus	25.96	24.27
KRH47179	Soybean	nucleus	24.76	23.9
KRH44227	Soybean	nucleus	24.76	23.25
Os08t0108500-01	Rice	nucleus	17.07	23.2
Os01t0831000-01	Rice	nucleus	10.58	20.47
Os02t0710300-01	Rice	nucleus	13.22	18.33
Os06t0496400-01	Rice	nucleus	10.82	15.31
Os12t0589000-00	Rice	nucleus	11.06	15.13
Os07t0588400-00	Rice	nucleus	10.58	14.92
Os01t0111500-01	Rice	nucleus	10.58	14.92
Os03t0205300-00	Rice	nucleus	11.54	14.08
Os11t0634700-00	Rice	extracellular	10.58	12.26

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:9269440	UniProt:A0A0P0WQ90	ProteinID:BAS95124.1	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0046983	GO:GO:0048586	GO:GO:0048587	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlantsGene:Os05g0541400	EnsemblPlants:Os05t0541400-00	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF309	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0003938B75	RefSeq:XP_015638480.1	InterPro:bHLH_dom	SEG:seg	:

Description

late flowering, basic helix-loop-helix protein 119Helix-loop-helix DNA-binding domain containing protein. (Os05t0541400-00)

Coordinates

chr5:+:26879818..26881142

Molecular Weight (calculated)

42673.7 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.292

Length

416 amino acids

Sequence
(BLAST)

001: MYMDAFGWSA PAAPCQPSCG PGGDDDDDVL LAAVLGASFE LHSLVDGGGN GAAGAVRSDD AYGLDVDLPS HQMSLLRCQD GLSALHGDAS PTAAAAAFLD
101: SVDVLPVPAI AGATHDDGGL LDRFAFPNVA ETTTVQAAAS NTAFSGYSSN TTGGGNISSG ESNTYTEVAS TPCAVSTTTT TTALPPSKRK LPEKYPVVGT
201: SPTTKTTTTS ETAAERRSTK RGAGGSSSIT FGGGCHGAGA AAALLGYGRG YEPDTEAIAQ VKEMIYRAAA MRPVTLGGPA SASDPSSRPP PPPQRPRRKN
301: VRISSDPQTV AARLRRERVS ERLRVLQRLV PGGSKMDTAT MLDEAASYLK FLKSQLEALE TLGNGNGNGN LLHHGYYTGS RNATATAATG SSNSTVLAFG
401: RDGLAGFVKS NRNLQL

Best Arabidopsis Sequence Match ( AT3G21330.1 )
(BLAST)

001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC

Arabidopsis Description

BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.