Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G362800.1 | Wheat | nucleus | 90.02 | 91.39 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 90.27 | 90.95 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 85.04 | 85.25 |
| Os05t0541400-00 | Rice | nucleus | 51.62 | 49.76 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 20.7 | 49.7 |
| EES18589 | Sorghum | nucleus | 44.64 | 44.64 |
| Zm00001d038863_P001 | Maize | nucleus | 42.64 | 43.18 |
| TraesCS3D01G252700.1 | Wheat | nucleus | 40.15 | 41.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.93 | 39.56 |
| TraesCS7D01G170900.1 | Wheat | nucleus | 14.46 | 31.35 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 16.71 | 30.45 |
| CDY62045 | Canola | nucleus | 25.19 | 30.15 |
| Bra031275.1-P | Field mustard | nucleus | 24.94 | 30.12 |
| CDY51449 | Canola | nucleus | 24.94 | 30.12 |
| CDY32423 | Canola | nucleus | 24.19 | 29.39 |
| Bra001826.1-P | Field mustard | nucleus | 23.69 | 29.32 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 16.96 | 28.94 |
| CDY48884 | Canola | nucleus | 23.44 | 28.06 |
| PGSC0003DMT400006453 | Potato | nucleus | 25.94 | 26.94 |
| Solyc03g121240.1.1 | Tomato | nucleus | 25.44 | 26.84 |
| AT3G21330.1 | Thale cress | nucleus | 24.44 | 26.27 |
| KRH23349 | Soybean | nucleus | 28.93 | 25.78 |
| KRH47179 | Soybean | nucleus | 27.18 | 25.29 |
| KRH09982 | Soybean | nucleus | 27.68 | 24.94 |
| KRH44227 | Soybean | nucleus | 27.43 | 24.83 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 28.68 | 24.26 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 27.93 | 23.78 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 10.47 | 22.58 |
| TraesCS3D01G344600.1 | Wheat | nucleus | 11.47 | 21.6 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 16.71 | 21.14 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 11.22 | 17.65 |
| TraesCS5D01G078800.1 | Wheat | nucleus | 12.47 | 17.3 |
| TraesCS2D01G193700.1 | Wheat | nucleus | 12.47 | 16.56 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 11.72 | 16.26 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 10.97 | 16.0 |
| TraesCS4D01G079500.1 | Wheat | nucleus | 12.47 | 15.97 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 11.22 | 15.9 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 11.72 | 15.67 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 11.22 | 15.31 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 10.47 | 15.27 |
| TraesCS4D01G257100.1 | Wheat | nucleus | 11.97 | 14.5 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 10.22 | 14.34 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0046983 | GO:GO:0048586 | GO:GO:0048587 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF309 | SMART:SM00353 | SUPFAM:SSF47459 |
| EnsemblPlantsGene:TraesCS1D01G367700 | EnsemblPlants:TraesCS1D01G367700.1 | InterPro:bHLH_dom | TIGR:cd00083 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:+:447549705..447551649
Molecular Weight (calculated)
41635.5 Da
IEP (calculated)
8.227
GRAVY (calculated)
-0.449
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAFGWSTQP PVTTVPSCPT DDALLAAFLG AGSFEELHSA GAGDGTVCSD AYHGGLDLPS CQSDLSLLRC QDGVALPGHG DASSNVFLGS AGGFLPAIAG
101: QHDGLHDRFA FVPDDPAQAA GSHTAFSGYS TTTGGGGGNV SSGESNTYGG GGHETEVASP PCAVSRRAQQ ISQVAPPPTK RNKMPDEHPA VGVTSATTTT
201: TVEARERWGT NRAAAPTTSI TFGHSGGRRG YEPDTEAIAQ VKEMIYRAAA MRPLPSLTAA AAGEPPHEPS SSKPRRRKNV RISSDPQTVA ARLRREKVSE
301: RLRALQRLVP GGSKMDTASM LDEAASYLKF LKSQVAALES LGGGGVGRDD DGRYSSLRRY TGRNFNPLSR GIGGGGGTML AFGRDGVAGY VKSSRNKNMQ
401: L
101: QHDGLHDRFA FVPDDPAQAA GSHTAFSGYS TTTGGGGGNV SSGESNTYGG GGHETEVASP PCAVSRRAQQ ISQVAPPPTK RNKMPDEHPA VGVTSATTTT
201: TVEARERWGT NRAAAPTTSI TFGHSGGRRG YEPDTEAIAQ VKEMIYRAAA MRPLPSLTAA AAGEPPHEPS SSKPRRRKNV RISSDPQTVA ARLRREKVSE
301: RLRALQRLVP GGSKMDTASM LDEAASYLKF LKSQVAALES LGGGGVGRDD DGRYSSLRRY TGRNFNPLSR GIGGGGGTML AFGRDGVAGY VKSSRNKNMQ
401: L
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.