Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18589 | Sorghum | nucleus | 79.04 | 78.05 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 22.47 | 53.29 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 43.18 | 42.75 |
| TraesCS1D01G367700.1 | Wheat | nucleus | 43.18 | 42.64 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 42.42 | 42.53 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 42.68 | 42.46 |
| Os05t0541400-00 | Rice | nucleus | 42.93 | 40.87 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.78 | 40.29 |
| Zm00001d043699_P001 | Maize | nucleus | 42.68 | 40.05 |
| CDY62045 | Canola | nucleus | 26.26 | 31.04 |
| Bra001826.1-P | Field mustard | nucleus | 25.25 | 30.86 |
| CDY51449 | Canola | nucleus | 25.51 | 30.42 |
| Bra031275.1-P | Field mustard | nucleus | 25.51 | 30.42 |
| CDY32423 | Canola | nucleus | 25.0 | 30.0 |
| Zm00001d050016_P001 | Maize | nucleus | 18.18 | 29.88 |
| PGSC0003DMT400006453 | Potato | nucleus | 29.04 | 29.79 |
| Solyc03g121240.1.1 | Tomato | nucleus | 28.28 | 29.47 |
| CDY48884 | Canola | nucleus | 24.49 | 28.96 |
| Zm00001d005841_P001 | Maize | nucleus | 17.68 | 28.93 |
| Zm00001d020705_P001 | Maize | nucleus | 17.68 | 28.93 |
| Zm00001d011187_P001 | Maize | nucleus | 31.31 | 28.84 |
| Zm00001d044242_P001 | Maize | nucleus | 32.58 | 26.82 |
| AT3G21330.1 | Thale cress | nucleus | 25.25 | 26.81 |
| Zm00001d031781_P001 | Maize | nucleus | 16.92 | 26.69 |
| Zm00001d049721_P001 | Maize | nucleus | 18.94 | 26.13 |
| KRH23349 | Soybean | nucleus | 27.78 | 24.44 |
| KRH47179 | Soybean | nucleus | 26.52 | 24.36 |
| KRH09982 | Soybean | nucleus | 27.27 | 24.27 |
| KRH44227 | Soybean | nucleus | 27.02 | 24.15 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 27.27 | 22.93 |
| Zm00001d035027_P001 | Maize | nucleus | 18.94 | 22.39 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 10.61 | 19.91 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 10.61 | 19.91 |
| Zm00001d006733_P001 | Maize | nucleus | 11.87 | 16.43 |
| Zm00001d041351_P001 | Maize | nucleus | 12.37 | 16.12 |
| Zm00001d021988_P001 | Maize | nucleus | 11.87 | 15.93 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 9.34 | 15.88 |
| Zm00001d028085_P001 | Maize | nucleus | 10.1 | 13.51 |
| Zm00001d048141_P001 | Maize | cytosol | 10.61 | 13.29 |
| Zm00001d008444_P001 | Maize | nucleus | 10.61 | 12.92 |
| Zm00001d017804_P001 | Maize | nucleus | 9.6 | 12.88 |
Protein Annotations
| EntrezGene:100382992 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AQK88089.1 | EMBL:BT066302 | UniProt:C0PDD3 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0046983 | GO:GO:0048586 | GO:GO:0048587 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF309 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000194B2D4 |
| EnsemblPlantsGene:Zm00001d038863 | EnsemblPlants:Zm00001d038863_P001 | EnsemblPlants:Zm00001d038863_T001 | InterPro:bHLH_dom | SEG:seg | : |
Description
Transcription factor bHLH87
Coordinates
chr6:+:166057719..166058909
Molecular Weight (calculated)
40374.6 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.394
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFGGWNMQ YAAELCLPSR RDDDDDGLLG DFLGGGGLDI RSDHGGLNLP SSHPAVQNLV PCHGGVSLSV SDAFMGLDTA DMLASVTGAL DCSLLDTFAC
101: GSDAVVVAEE PAAQPTASSN AFSGYSSTTG GNYGNISSGE SNTYGGSGGG HDTEVASPTC ASKRKLAGKY PAIAAASATA TTKTAEGQVA APRRGTKRDS
201: ATSSSSTSAT VAGHGGGNHA AGGGGSSSVG DGNGYEPDSE AIAQVKEMIY RAAAMRPVHQ LVCGAAGGEP PSSSQNKPRR RNVRISSDPQ TVAARLRRER
301: VSERLRVLQR LVPGGSRMDT ASMLDEAAGY LKFLKSQVKA LERANPSSNG GYNDSSFLPQ SYTGCLGVDG GTSAAFGSDG AIGGYGYVKP GRNMHR
101: GSDAVVVAEE PAAQPTASSN AFSGYSSTTG GNYGNISSGE SNTYGGSGGG HDTEVASPTC ASKRKLAGKY PAIAAASATA TTKTAEGQVA APRRGTKRDS
201: ATSSSSTSAT VAGHGGGNHA AGGGGSSSVG DGNGYEPDSE AIAQVKEMIY RAAAMRPVHQ LVCGAAGGEP PSSSQNKPRR RNVRISSDPQ TVAARLRRER
301: VSERLRVLQR LVPGGSRMDT ASMLDEAAGY LKFLKSQVKA LERANPSSNG GYNDSSFLPQ SYTGCLGVDG GTSAAFGSDG AIGGYGYVKP GRNMHR
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.