Factsheet for Zm00001d042989_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042988_P001	Maize	nucleus, plastid	100.0	100.0
OQU87789	Sorghum	cytosol	59.24	87.41
Os01t0831000-01	Rice	nucleus	64.93	63.72
TraesCS3A01G350600.1	Wheat	nucleus	58.77	58.49
TraesCS3D01G344600.1	Wheat	nucleus	58.29	57.75
HORVU3Hr1G087710.1	Barley	nucleus	57.35	57.62
TraesCS3B01G383000.1	Wheat	nucleus	57.35	57.08
Solyc09g005070.1.1	Tomato	nucleus	28.44	40.54
VIT_08s0058g00110.t01	Wine grape	plastid	30.81	40.37
KRH00301	Soybean	nucleus, plastid	33.18	39.77
KRH49427	Soybean	nucleus, plastid	31.75	38.07
KRH75991	Soybean	nucleus, plastid	30.33	35.96
KRH65648	Soybean	nucleus, plastid	30.33	35.16
GSMUA_Achr4P18820_001	Banana	nucleus	34.12	35.12
AT5G01305.1	Thale cress	nucleus, plastid	26.54	32.75
Bra028895.1-P	Field mustard	nucleus, plastid	26.07	31.07
CDY66929	Canola	nucleus, plastid	26.07	31.07
CDY55900	Canola	nucleus, plastid	26.07	31.07
Zm00001d031781_P001	Maize	nucleus	26.54	22.31
Zm00001d050016_P001	Maize	nucleus	24.64	21.58
Zm00001d020705_P001	Maize	nucleus	24.17	21.07
Zm00001d005841_P001	Maize	nucleus	22.27	19.42
Zm00001d049721_P001	Maize	nucleus	24.17	17.77
Zm00001d035027_P001	Maize	nucleus	24.17	15.22
Zm00001d048786_P001	Maize	nucleus, plastid	15.17	13.73
Zm00001d017804_P001	Maize	nucleus	18.01	12.88
Zm00001d006733_P001	Maize	nucleus	17.06	12.59
Zm00001d021988_P001	Maize	nucleus	17.06	12.2
Zm00001d041351_P001	Maize	nucleus	15.64	10.86
Zm00001d038863_P001	Maize	nucleus	19.91	10.61
Zm00001d011187_P001	Maize	nucleus	21.33	10.47
Zm00001d008444_P001	Maize	nucleus	16.11	10.46
Zm00001d043699_P001	Maize	nucleus	20.85	10.43
Zm00001d044242_P001	Maize	nucleus	21.33	9.36
Zm00001d028085_P001	Maize	nucleus	12.32	8.78
Zm00001d048141_P001	Maize	cytosol	12.8	8.54

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6N7X0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	ProteinID:ONM36682.1	ProteinID:ONM36683.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF167	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000842CA2B	EnsemblPlantsGene:Zm00001d042989	EnsemblPlants:Zm00001d042989_P001	EnsemblPlants:Zm00001d042989_T001	InterPro:bHLH_dom	SEG:seg

Description

barren stalk1Transcription factor bHLH83

Coordinates

chr3:+:186014629..186015264

Molecular Weight (calculated)

22746.9 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.330

Length

211 amino acids

Sequence
(BLAST)

001: MYDPRGFPII HPQPYLQHPV AGALGDSRVR GGGSGARRRP GAKLSTDPQS VAARERRHRI SDRFRVLRSL VPGGSKMDTV SMLEQAIHYV KFLKTQISLH
101: QAALMQHEEG CHAELAAYSA VAVVGDNEVT LASHGRTGAC DEMMQLQVAA EEALSYGVDA HQPYGLDPRQ LSGGHELPPL PASCIFLEEP ADACYSVCDL
201: DDGDTGLPGS Y

Best Arabidopsis Sequence Match ( AT5G01305.1 )
(BLAST)

001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S

Arabidopsis Description

Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.