Factsheet for VIT_08s0058g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005070.1.1	Tomato	nucleus	47.83	52.03
KRH75991	Soybean	nucleus, plastid	56.52	51.12
KRH65648	Soybean	nucleus, plastid	56.52	50.0
KRH00301	Soybean	nucleus, plastid	49.69	45.45
AT5G01305.1	Thale cress	nucleus, plastid	47.83	45.03
KRH49427	Soybean	nucleus, plastid	49.07	44.89
Bra028895.1-P	Field mustard	nucleus, plastid	44.1	40.11
CDY66929	Canola	nucleus, plastid	44.1	40.11
CDY55900	Canola	nucleus, plastid	44.1	40.11
GSMUA_Achr4P18820_001	Banana	nucleus	47.83	37.56
Zm00001d042989_P001	Maize	nucleus, plastid	40.37	30.81
Zm00001d042988_P001	Maize	nucleus, plastid	40.37	30.81
Os01t0831000-01	Rice	nucleus	40.99	30.7
HORVU3Hr1G087710.1	Barley	nucleus	39.13	30.0
TraesCS3B01G383000.1	Wheat	nucleus	39.13	29.72
TraesCS3D01G344600.1	Wheat	nucleus	39.13	29.58
TraesCS3A01G350600.1	Wheat	nucleus	38.51	29.25
VIT_04s0044g01040.t01	Wine grape	nucleus	32.3	23.32
VIT_07s0031g00550.t01	Wine grape	nucleus	34.16	21.83
VIT_18s0001g10400.t01	Wine grape	nucleus	33.54	21.77
OQU87789	Sorghum	cytosol	18.63	20.98
VIT_18s0001g09210.t01	Wine grape	nucleus	27.33	17.25
VIT_14s0006g01470.t01	Wine grape	nucleus	25.47	11.82
VIT_03s0091g00730.t01	Wine grape	nucleus	24.84	11.43
VIT_09s0002g02700.t01	Wine grape	nucleus	29.81	10.19

Protein Annotations

EntrezGene:104880030	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A5BMK9	EMBL:AM464748	ProteinID:CAN77067
ProteinID:CAN77067.1	ProteinID:CBI18142	ProteinID:CBI18142.3	EMBL:FN594967	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006790	GO:GO:0008150	GO:GO:0008152
GO:GO:0009150	GO:GO:0009987	GO:GO:0016787	GO:GO:0046983	GO:GO:0047627	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF167
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00015213FD	ArrayExpress:VIT_08s0058g00110	EnsemblPlantsGene:VIT_08s0058g00110	EnsemblPlants:VIT_08s0058g00110.t01
RefSeq:XP_010653434.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:8753833..8754318

Molecular Weight (calculated)

18162.4 Da

IEP (calculated)

6.956

GRAVY (calculated)

-0.616

Length

161 amino acids

Sequence
(BLAST)

001: MDYPSSSNPS SSLSSSVANI GKDKKKGGKR SKGVKLSTDP QSVAARERRH RISDRFKILQ SLVPGGTKMD TVSMLEEAIH YVKYLKTQIW LHQTMINFVD
101: DDPSLLYQSD SLPSHQQEAF YSPDETLAMM QPYITTTAPV RDSYCFQGEE TMFSDASVNY Y

Best Arabidopsis Sequence Match ( AT5G01305.1 )
(BLAST)

001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S

Arabidopsis Description

Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.