Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0105g00490.t01 | |
| VIT_09s0054g00530.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | VIT_08s0105g00490.t01 | AT2G38270.1 | 21798944 |
| AT4G00120.1 | VIT_09s0054g00530.t01 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18580_001 | Banana | cytosol | 38.56 | 70.49 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 42.6 | 56.55 |
| GSMUA_Achr11P... | Banana | nucleus | 43.5 | 50.79 |
| KRH64060 | Soybean | nucleus | 52.47 | 48.15 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 42.15 | 47.47 |
| KRH53884 | Soybean | nucleus | 49.78 | 47.44 |
| CDX91916 | Canola | cytosol | 34.53 | 43.26 |
| CDX74329 | Canola | cytosol | 34.98 | 42.86 |
| Bra000979.1-P | Field mustard | cytosol | 34.98 | 42.16 |
| Os08t0108500-01 | Rice | nucleus | 54.26 | 39.54 |
| AT4G00120.1 | Thale cress | nucleus | 34.98 | 39.39 |
| Zm00001d049721_P001 | Maize | nucleus | 50.67 | 39.37 |
| PGSC0003DMT400073760 | Potato | nucleus | 45.74 | 38.93 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 54.26 | 38.66 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 54.26 | 38.17 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 54.26 | 37.69 |
| Solyc11g005780.1.1 | Tomato | nucleus | 46.64 | 36.75 |
| Zm00001d035027_P001 | Maize | nucleus | 54.71 | 36.42 |
| EES14382 | Sorghum | nucleus | 53.81 | 34.48 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 50.22 | 33.04 |
| VIT_18s0001g10400.t01 | Wine grape | nucleus | 36.32 | 32.66 |
| VIT_08s0058g00110.t01 | Wine grape | plastid | 23.32 | 32.3 |
| VIT_07s0031g00550.t01 | Wine grape | nucleus | 35.43 | 31.35 |
| VIT_18s0001g09210.t01 | Wine grape | nucleus | 21.97 | 19.22 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 34.08 | 16.14 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 21.52 | 13.71 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 17.94 | 11.53 |
Protein Annotations
| EntrezGene:100242028 | wikigene:100242028 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CCB60426 | ProteinID:CCB60426.1 |
| ncoils:Coil | UniProt:F6I0G0 | EMBL:FN596506 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100242028 | wikigene:LOC100242028 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002109722 | ArrayExpress:VIT_04s0044g01040 | EnsemblPlantsGene:VIT_04s0044g01040 | EnsemblPlants:VIT_04s0044g01040.t01 | RefSeq:XP_002275141 | RefSeq:XP_002275141.1 |
| RefSeq:XP_002275141.2 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:+:22358786..22359457
Molecular Weight (calculated)
24973.7 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.475
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKHTFVDIN HSNFTNNTWE VDLAMEEQIL HDHHLPFDAV WPNFPLPTHN ITAAASSSSQ ISASVLLGDQ MGNLLEEDEE PEEELGAMKE MMYKIAAMQP
101: VDIDPATIRK PKRRNVRISD DPQSVAARHR RERISEKIRI LQRLVPGGTK MDTASMLDEA IRYVKFLKRQ IRQLQSNHHP LPTDVTACLS TPDWAVTSTK
201: LLGSTSSSSM EAPGGGGFSF RAL
101: VDIDPATIRK PKRRNVRISD DPQSVAARHR RERISEKIRI LQRLVPGGTK MDTASMLDEA IRYVKFLKRQ IRQLQSNHHP LPTDVTACLS TPDWAVTSTK
201: LLGSTSSSSM EAPGGGGFSF RAL
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.