Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000047.1-P | |
| Bra001815.1-P | |
| Bra031255.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | Bra000047.1-P | AT2G38270.1 | 21798944 |
| AT4G00120.1 | Bra001815.1-P | AT3G21150.1 | 21798944 |
| AT4G00120.1 | Bra031255.1-P | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74329 | Canola | cytosol | 98.38 | 100.0 |
| AT4G00120.1 | Thale cress | nucleus | 61.08 | 57.07 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 36.76 | 55.74 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 36.22 | 39.88 |
| GSMUA_Achr11P... | Banana | nucleus | 41.08 | 39.79 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 41.62 | 38.89 |
| Bra028620.1-P | Field mustard | nucleus | 42.16 | 36.45 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 42.16 | 34.98 |
| KRH53884 | Soybean | nucleus | 42.16 | 33.33 |
| KRH64060 | Soybean | nucleus | 42.16 | 32.1 |
| Bra036071.1-P | Field mustard | nucleus | 36.76 | 31.92 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 35.14 | 31.71 |
| Bra012128.1-P | Field mustard | nucleus | 35.68 | 30.14 |
| Bra030002.1-P | Field mustard | nucleus | 37.3 | 30.0 |
| PGSC0003DMT400073760 | Potato | nucleus | 41.08 | 29.01 |
| Bra036801.1-P | Field mustard | nucleus | 35.68 | 28.57 |
| Solyc11g005780.1.1 | Tomato | nucleus | 41.08 | 26.86 |
| Os08t0108500-01 | Rice | nucleus | 43.78 | 26.47 |
| Zm00001d049721_P001 | Maize | nucleus | 40.54 | 26.13 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 42.16 | 24.92 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 42.16 | 24.3 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 41.62 | 24.29 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 22.7 | 23.73 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 42.7 | 23.3 |
| Zm00001d035027_P001 | Maize | nucleus | 42.16 | 23.28 |
| EES14382 | Sorghum | nucleus | 43.78 | 23.28 |
| Bra001826.1-P | Field mustard | nucleus | 34.05 | 19.44 |
| Bra031275.1-P | Field mustard | nucleus | 33.51 | 18.67 |
| Bra030063.1-P | Field mustard | nucleus | 18.38 | 13.33 |
| Bra010921.1-P | Field mustard | nucleus | 17.3 | 12.5 |
| Bra032846.1-P | Field mustard | nucleus | 16.22 | 12.3 |
| Bra011476.1-P | Field mustard | nucleus | 21.08 | 11.24 |
| Bra036969.1-P | Field mustard | nucleus | 21.08 | 11.14 |
| Bra034587.1-P | Field mustard | nucleus | 20.0 | 10.69 |
| Bra019708.1-P | Field mustard | nucleus | 16.76 | 10.1 |
| Bra039819.1-P | Field mustard | nucleus | 18.38 | 9.83 |
| Bra004169.1-P | Field mustard | nucleus | 10.27 | 7.09 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:ADC68235 | ProteinID:ADC68235.1 | EnsemblPlantsGene:Bra000979 | EnsemblPlants:Bra000979.1 |
| EnsemblPlants:Bra000979.1-P | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010197 |
| GO:GO:0016043 | GO:GO:0030154 | GO:GO:0046983 | EMBL:GU386357 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M4C9V0 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001A945C2 | InterPro:bHLH_dom | SEG:seg | : |
Description
AT4G00120 (E=6e-031) IND1, GT140, IND, EDA33 | IND (INDEHISCENT); DNA binding / transcription factor
Coordinates
chrA03:+:14239554..14240111
Molecular Weight (calculated)
20988.9 Da
IEP (calculated)
5.848
GRAVY (calculated)
-0.681
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSKADAAI APIVMMEHHH LLMNWNKPID LITEENSFNH NPHFIVDPPS ETLSHFQPPP TIFSDHGGGE EAEEEEEEEG EEEMDPMKKM QYAIAAMQPV
101: DLDPATVPKP NRRNVRVSDD PQTVVARRRR ERISEKIRIL KRMVPGGAKM DTASMLDEAI RYTKFLKRQV RLASSASHSA WSSYV
101: DLDPATVPKP NRRNVRVSDD PQTVVARRRR ERISEKIRIL KRMVPGGAKM DTASMLDEAI RYTKFLKRQV RLASSASHSA WSSYV
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
Arabidopsis Description
INDTranscription factor IND [Source:UniProtKB/Swiss-Prot;Acc:O81313]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.