Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra000979.1-P | Field mustard | cytosol | 100.0 | 98.38 |
CDX91916 | Canola | cytosol | 80.77 | 82.58 |
AT4G00120.1 | Thale cress | nucleus | 62.09 | 57.07 |
GSMUA_Achr6P18580_001 | Banana | cytosol | 37.36 | 55.74 |
GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 36.81 | 39.88 |
GSMUA_Achr11P... | Banana | nucleus | 41.76 | 39.79 |
GSMUA_Achr5P01290_001 | Banana | nucleus | 42.31 | 38.89 |
CDX85799 | Canola | nucleus | 42.86 | 36.45 |
CDY64847 | Canola | nucleus | 42.86 | 36.28 |
VIT_04s0044g01040.t01 | Wine grape | nucleus | 42.86 | 34.98 |
CDY21597 | Canola | nucleus | 42.31 | 34.53 |
KRH53884 | Soybean | nucleus | 42.86 | 33.33 |
KRH64060 | Soybean | nucleus | 42.86 | 32.1 |
CDY30593 | Canola | nucleus | 37.36 | 31.92 |
CDY18636 | Canola | nucleus | 35.71 | 31.71 |
CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 35.71 | 31.4 |
CDY12799 | Canola | nucleus | 36.81 | 30.73 |
CDX68583 | Canola | nucleus | 37.91 | 30.4 |
CDY01443 | Canola | nucleus | 36.26 | 30.14 |
CDY17765 | Canola | nucleus | 37.36 | 30.09 |
CDX83121 | Canola | nucleus | 37.91 | 30.0 |
PGSC0003DMT400073760 | Potato | nucleus | 41.76 | 29.01 |
CDY63952 | Canola | nucleus | 36.26 | 28.57 |
CDY43559 | Canola | nucleus | 36.26 | 28.57 |
Solyc11g005780.1.1 | Tomato | nucleus | 41.76 | 26.86 |
Os08t0108500-01 | Rice | nucleus | 44.51 | 26.47 |
Zm00001d049721_P001 | Maize | nucleus | 41.21 | 26.13 |
TraesCS7A01G323000.1 | Wheat | nucleus | 42.86 | 24.92 |
TraesCS7B01G223900.1 | Wheat | nucleus | 42.86 | 24.3 |
TraesCS7D01G319600.1 | Wheat | nucleus | 42.31 | 24.29 |
CDY66929 | Canola | nucleus, plastid | 23.08 | 23.73 |
CDY55900 | Canola | nucleus, plastid | 23.08 | 23.73 |
HORVU7Hr1G077270.3 | Barley | cytosol | 43.41 | 23.3 |
Zm00001d035027_P001 | Maize | nucleus | 42.86 | 23.28 |
EES14382 | Sorghum | nucleus | 44.51 | 23.28 |
CDY48884 | Canola | nucleus | 35.16 | 19.1 |
CDY32423 | Canola | nucleus | 34.07 | 18.79 |
CDY51449 | Canola | nucleus | 34.07 | 18.67 |
CDY62045 | Canola | nucleus | 34.07 | 18.51 |
CDY15706 | Canola | nucleus | 18.68 | 16.04 |
CDX90106 | Canola | nucleus | 17.58 | 15.02 |
CDY03948 | Canola | cytosol | 11.54 | 14.48 |
CDY11802 | Canola | nucleus | 16.48 | 13.04 |
CDY11768 | Canola | nucleus | 18.13 | 12.89 |
CDY27630 | Canola | nucleus | 16.48 | 12.4 |
CDX84906 | Canola | nucleus | 16.48 | 12.3 |
CDX72435 | Canola | nucleus | 21.98 | 11.43 |
CDX75386 | Canola | nucleus | 21.43 | 11.24 |
CDX69011 | Canola | nucleus | 21.43 | 11.24 |
CDY49379 | Canola | nucleus | 21.43 | 11.14 |
CDY11694 | Canola | nucleus | 17.03 | 10.69 |
CDX96145 | Canola | nucleus | 17.03 | 10.69 |
CDY55674 | Canola | nucleus | 17.03 | 10.69 |
CDX68049 | Canola | nucleus | 17.03 | 10.69 |
CDY28328 | Canola | nucleus | 20.33 | 10.39 |
CDY61813 | Canola | nucleus | 17.03 | 10.16 |
CDX81461 | Canola | nucleus | 19.23 | 10.12 |
CDY37221 | Canola | nucleus | 19.23 | 10.12 |
CDY58387 | Canola | nucleus | 17.03 | 10.1 |
CDY48431 | Canola | nucleus | 15.93 | 9.03 |
CDY03946 | Canola | nucleus | 5.49 | 3.64 |
Protein Annotations
EnsemblPlants:CDX74329 | EnsemblPlantsGene:GSBRNA2T00112126001 | Gene3D:4.10.280.10 | GO:A0A078CDT5 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX74329 | ProteinID:CDX74329.1 |
SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE8DBE | MapMan:15.5.32 | : |
Description
BnaA03g27180D
Coordinates
chrLK031800:-:2216191..2216739
Molecular Weight (calculated)
20601.6 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.634
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSKADAAI APIVMMEHHH LLMNWNKPID LITEENSFNH NPHFIVDPPS ETLSHFQPPP TIFSDHGGGE EAEEEEGEEE MDPMKKMQYA IAAMQPVDLD
101: PATVPKPNRR NVRVSDDPQT VVARRRRERI SEKIRILKRM VPGGAKMDTA SMLDEAIRYT KFLKRQVRLA SSASHSAWSS YV
101: PATVPKPNRR NVRVSDDPQT VVARRRRERI SEKIRILKRM VPGGAKMDTA SMLDEAIRYT KFLKRQVRLA SSASHSAWSS YV
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
Arabidopsis Description
INDTranscription factor IND [Source:UniProtKB/Swiss-Prot;Acc:O81313]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.