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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000979.1-P Field mustard cytosol 100.0 98.38
CDX91916 Canola cytosol 80.77 82.58
AT4G00120.1 Thale cress nucleus 62.09 57.07
GSMUA_Achr6P18580_001 Banana cytosol 37.36 55.74
GSMUA_Achr7P23410_001 Banana endoplasmic reticulum, extracellular, vacuole 36.81 39.88
GSMUA_Achr11P... Banana nucleus 41.76 39.79
GSMUA_Achr5P01290_001 Banana nucleus 42.31 38.89
CDX85799 Canola nucleus 42.86 36.45
CDY64847 Canola nucleus 42.86 36.28
VIT_04s0044g01040.t01 Wine grape nucleus 42.86 34.98
CDY21597 Canola nucleus 42.31 34.53
KRH53884 Soybean nucleus 42.86 33.33
KRH64060 Soybean nucleus 42.86 32.1
CDY30593 Canola nucleus 37.36 31.92
CDY18636 Canola nucleus 35.71 31.71
CDX81342 Canola cytoskeleton, cytosol, nucleus 35.71 31.4
CDY12799 Canola nucleus 36.81 30.73
CDX68583 Canola nucleus 37.91 30.4
CDY01443 Canola nucleus 36.26 30.14
CDY17765 Canola nucleus 37.36 30.09
CDX83121 Canola nucleus 37.91 30.0
PGSC0003DMT400073760 Potato nucleus 41.76 29.01
CDY63952 Canola nucleus 36.26 28.57
CDY43559 Canola nucleus 36.26 28.57
Solyc11g005780.1.1 Tomato nucleus 41.76 26.86
Os08t0108500-01 Rice nucleus 44.51 26.47
Zm00001d049721_P001 Maize nucleus 41.21 26.13
TraesCS7A01G323000.1 Wheat nucleus 42.86 24.92
TraesCS7B01G223900.1 Wheat nucleus 42.86 24.3
TraesCS7D01G319600.1 Wheat nucleus 42.31 24.29
CDY66929 Canola nucleus, plastid 23.08 23.73
CDY55900 Canola nucleus, plastid 23.08 23.73
HORVU7Hr1G077270.3 Barley cytosol 43.41 23.3
Zm00001d035027_P001 Maize nucleus 42.86 23.28
EES14382 Sorghum nucleus 44.51 23.28
CDY48884 Canola nucleus 35.16 19.1
CDY32423 Canola nucleus 34.07 18.79
CDY51449 Canola nucleus 34.07 18.67
CDY62045 Canola nucleus 34.07 18.51
CDY15706 Canola nucleus 18.68 16.04
CDX90106 Canola nucleus 17.58 15.02
CDY03948 Canola cytosol 11.54 14.48
CDY11802 Canola nucleus 16.48 13.04
CDY11768 Canola nucleus 18.13 12.89
CDY27630 Canola nucleus 16.48 12.4
CDX84906 Canola nucleus 16.48 12.3
CDX72435 Canola nucleus 21.98 11.43
CDX75386 Canola nucleus 21.43 11.24
CDX69011 Canola nucleus 21.43 11.24
CDY49379 Canola nucleus 21.43 11.14
CDY11694 Canola nucleus 17.03 10.69
CDX96145 Canola nucleus 17.03 10.69
CDY55674 Canola nucleus 17.03 10.69
CDX68049 Canola nucleus 17.03 10.69
CDY28328 Canola nucleus 20.33 10.39
CDY61813 Canola nucleus 17.03 10.16
CDX81461 Canola nucleus 19.23 10.12
CDY37221 Canola nucleus 19.23 10.12
CDY58387 Canola nucleus 17.03 10.1
CDY48431 Canola nucleus 15.93 9.03
CDY03946 Canola nucleus 5.49 3.64
Protein Annotations
EnsemblPlants:CDX74329EnsemblPlantsGene:GSBRNA2T00112126001Gene3D:4.10.280.10GO:A0A078CDT5GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_dom
PANTHER:PTHR12565PANTHER:PTHR12565:SF125PFAM:PF00010PFscan:PS50888ProteinID:CDX74329ProteinID:CDX74329.1
SEG:segSMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EE8DBEMapMan:15.5.32:
Description
BnaA03g27180D
Coordinates
chrLK031800:-:2216191..2216739
Molecular Weight (calculated)
20601.6 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.634
Length
182 amino acids
Sequence
(BLAST)
001: MSGSKADAAI APIVMMEHHH LLMNWNKPID LITEENSFNH NPHFIVDPPS ETLSHFQPPP TIFSDHGGGE EAEEEEGEEE MDPMKKMQYA IAAMQPVDLD
101: PATVPKPNRR NVRVSDDPQT VVARRRRERI SEKIRILKRM VPGGAKMDTA SMLDEAIRYT KFLKRQVRLA SSASHSAWSS YV
Best Arabidopsis Sequence Match ( AT4G00120.1 )
(BLAST)
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
Arabidopsis Description
INDTranscription factor IND [Source:UniProtKB/Swiss-Prot;Acc:O81313]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.