Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74329 | Canola | cytosol | 82.58 | 80.77 |
| AT4G00120.1 | Thale cress | nucleus | 71.35 | 64.14 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 39.89 | 58.2 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 39.33 | 41.67 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 43.26 | 38.89 |
| GSMUA_Achr11P... | Banana | nucleus | 41.57 | 38.74 |
| CDX85799 | Canola | nucleus | 43.82 | 36.45 |
| CDY64847 | Canola | nucleus | 43.82 | 36.28 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 43.26 | 34.53 |
| CDY21597 | Canola | nucleus | 43.26 | 34.53 |
| KRH53884 | Soybean | nucleus | 44.38 | 33.76 |
| KRH64060 | Soybean | nucleus | 44.94 | 32.92 |
| CDY30593 | Canola | nucleus | 39.33 | 32.86 |
| CDY18636 | Canola | nucleus | 37.64 | 32.68 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 37.64 | 32.37 |
| CDY01443 | Canola | nucleus | 38.2 | 31.05 |
| CDY12799 | Canola | nucleus | 37.64 | 30.73 |
| CDX68583 | Canola | nucleus | 38.76 | 30.4 |
| CDY17765 | Canola | nucleus | 38.2 | 30.09 |
| CDX83121 | Canola | nucleus | 38.76 | 30.0 |
| PGSC0003DMT400073760 | Potato | nucleus | 43.26 | 29.39 |
| CDY63952 | Canola | nucleus | 37.64 | 29.0 |
| CDY43559 | Canola | nucleus | 37.64 | 29.0 |
| Zm00001d049721_P001 | Maize | nucleus | 44.38 | 27.53 |
| Solyc11g005780.1.1 | Tomato | nucleus | 42.7 | 26.86 |
| Os08t0108500-01 | Rice | nucleus | 44.94 | 26.14 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 44.94 | 25.56 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 44.94 | 24.92 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 44.38 | 24.92 |
| CDY66929 | Canola | nucleus, plastid | 24.72 | 24.86 |
| CDY55900 | Canola | nucleus, plastid | 24.72 | 24.86 |
| Zm00001d035027_P001 | Maize | nucleus | 45.51 | 24.18 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 45.51 | 23.89 |
| EES14382 | Sorghum | nucleus | 45.51 | 23.28 |
| CDY48884 | Canola | nucleus | 37.64 | 20.0 |
| CDY32423 | Canola | nucleus | 36.52 | 19.7 |
| CDY51449 | Canola | nucleus | 36.52 | 19.58 |
| CDY62045 | Canola | nucleus | 36.52 | 19.4 |
| CDY15706 | Canola | nucleus | 19.66 | 16.51 |
| CDY03948 | Canola | cytosol | 12.92 | 15.86 |
| CDX90106 | Canola | nucleus | 18.54 | 15.49 |
| CDY11768 | Canola | nucleus | 19.1 | 13.28 |
| CDY27630 | Canola | nucleus | 17.98 | 13.22 |
| CDX84906 | Canola | nucleus | 17.98 | 13.11 |
| CDY11802 | Canola | nucleus | 16.29 | 12.61 |
| CDY55674 | Canola | nucleus | 18.54 | 11.38 |
| CDX68049 | Canola | nucleus | 18.54 | 11.38 |
| CDY11694 | Canola | nucleus | 18.54 | 11.38 |
| CDX96145 | Canola | nucleus | 18.54 | 11.38 |
| CDX75386 | Canola | nucleus | 21.91 | 11.24 |
| CDX69011 | Canola | nucleus | 21.91 | 11.24 |
| CDX72435 | Canola | nucleus | 21.91 | 11.14 |
| CDY28328 | Canola | nucleus | 21.91 | 10.96 |
| CDY49379 | Canola | nucleus | 21.35 | 10.86 |
| CDY61813 | Canola | nucleus | 18.54 | 10.82 |
| CDY58387 | Canola | nucleus | 18.54 | 10.75 |
| CDX81461 | Canola | nucleus | 20.79 | 10.69 |
| CDY37221 | Canola | nucleus | 20.79 | 10.69 |
| CDY48431 | Canola | nucleus | 15.73 | 8.72 |
| CDY03946 | Canola | nucleus | 5.06 | 3.27 |
Protein Annotations
| EnsemblPlants:CDX91916 | EnsemblPlantsGene:GSBRNA2T00153545001 | Gene3D:4.10.280.10 | GO:A0A078DRJ7 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX91916 | ProteinID:CDX91916.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF0E7E | MapMan:15.5.32 | : |
Description
BnaC03g32180D
Coordinates
chrLK031870:+:800039..800626
Molecular Weight (calculated)
20368.6 Da
IEP (calculated)
8.490
GRAVY (calculated)
-0.619
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSKADAAA IAPIVMMEPH HLLMNWNKPI DLITQENSFN HNPHFMVDPP SETLSHFQPP PTEEIDEMKE MQYAIAAMQP VDIDPATVPK PNRRNVRVSE
101: DPQTVVARRR RERISEKIRI LKRMVPGGAK MDTASMLDEA IRYTKFLKRQ VRLLQPHTQL GAPMSDPSRL CYYHNSDT
101: DPQTVVARRR RERISEKIRI LKRMVPGGAK MDTASMLDEA IRYTKFLKRQ VRLLQPHTQL GAPMSDPSRL CYYHNSDT
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
Arabidopsis Description
INDTranscription factor IND [Source:UniProtKB/Swiss-Prot;Acc:O81313]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.