Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82214 | Canola | cytosol | 84.55 | 80.87 |
| CDY50075 | Canola | nucleus | 67.73 | 66.82 |
| CDY19582 | Canola | cytosol | 63.64 | 63.35 |
| AT3G21150.1 | Thale cress | cytosol | 62.27 | 60.89 |
| CDY22930 | Canola | cytosol | 12.73 | 28.87 |
| CDY57233 | Canola | cytosol | 12.73 | 28.87 |
| CDY64254 | Canola | cytosol | 14.55 | 28.57 |
| GSMUA_Achr9P13880_001 | Banana | nucleus | 17.73 | 26.53 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 15.45 | 24.82 |
| CDX71395 | Canola | cytosol | 13.64 | 24.39 |
| CDY55658 | Canola | cytosol | 13.64 | 24.39 |
| CDY33149 | Canola | cytosol, nucleus, plastid | 13.18 | 23.2 |
| VIT_09s0054g00530.t01 | Wine grape | cytosol, nucleus, plastid | 26.82 | 22.69 |
| Solyc06g063280.1.1 | Tomato | nucleus | 25.45 | 21.46 |
| GSMUA_Achr6P03790_001 | Banana | nucleus | 20.91 | 20.54 |
| GSMUA_Achr1P10450_001 | Banana | cytosol | 22.27 | 20.5 |
| CDY42453 | Canola | cytosol | 16.82 | 20.44 |
| CDY18333 | Canola | nucleus | 16.36 | 20.0 |
| PGSC0003DMT400068177 | Potato | nucleus | 22.73 | 19.08 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 20.45 | 18.37 |
| KRH47291 | Soybean | nucleus | 20.0 | 18.11 |
| KRH44613 | Soybean | nucleus | 19.55 | 17.84 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 19.55 | 14.58 |
Protein Annotations
| EnsemblPlants:CDY32408 | EnsemblPlantsGene:GSBRNA2T00051997001 | GO:A0A078H6H1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF22 | ProteinID:CDY32408 | ProteinID:CDY32408.1 | SEG:seg | SMART:SM00336 | UniParc:UPI0004EDE128 |
| UniProt:A0A078H6H1 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g41920DBnaC03g41920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6H1]
Coordinates
chrLK032294:-:172546..173208
Molecular Weight (calculated)
23667.4 Da
IEP (calculated)
8.607
GRAVY (calculated)
-0.074
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLCELCGA EAHLHCDADS AYLCRSCDVK FHASNFLFSR HVRRAICPGC SSLTGDIVSG SLSPWPAKIT CSCCGTSSSS ASSCCSELSS STTRKTIVNR
101: GPRRREKGVN AVADGIFVNW CDELGLNGDS KNEVVSLASL ALAVWKTRGT KVILAAAFWF GVRNARKTMT CPRLKKVEDV TGVAAGMIRA GEGKLARAVT
201: LQLRRCRVDS EEGWAENDNV
101: GPRRREKGVN AVADGIFVNW CDELGLNGDS KNEVVSLASL ALAVWKTRGT KVILAAAFWF GVRNARKTMT CPRLKKVEDV TGVAAGMIRA GEGKLARAVT
201: LQLRRCRVDS EEGWAENDNV
001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV
Arabidopsis Description
BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.