Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023857.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY55658 | Canola | cytosol | 100.0 | 100.0 |
| CDY64254 | Canola | cytosol | 85.37 | 93.75 |
| CDY33149 | Canola | cytosol, nucleus, plastid | 83.74 | 82.4 |
| AT3G21890.1 | Thale cress | cytosol | 65.04 | 66.12 |
| CDY22930 | Canola | cytosol | 43.09 | 54.64 |
| CDY57233 | Canola | cytosol | 43.09 | 54.64 |
| KRH26836 | Soybean | cytosol, nucleus, plastid | 37.4 | 37.1 |
| KRH22520 | Soybean | cytosol, nucleus, plastid | 36.59 | 36.29 |
| VIT_12s0059g02510.t01 | Wine grape | nucleus | 37.4 | 36.22 |
| Solyc07g052620.1.1 | Tomato | nucleus | 34.15 | 32.31 |
| PGSC0003DMT400067296 | Potato | nucleus | 30.89 | 29.23 |
| CDY28768 | Canola | cytosol, nucleus, plastid | 26.83 | 24.09 |
| CDY42453 | Canola | cytosol | 26.83 | 18.23 |
| CDY18333 | Canola | nucleus | 24.39 | 16.67 |
| CDY19582 | Canola | cytosol | 26.02 | 14.48 |
| CDY50075 | Canola | nucleus | 25.2 | 13.9 |
| CDY32408 | Canola | cytosol | 24.39 | 13.64 |
| CDX82214 | Canola | cytosol | 24.39 | 13.04 |
Protein Annotations
| EnsemblPlants:CDX71395 | EnsemblPlantsGene:GSBRNA2T00148213001 | GO:A0A078C3G9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | ProteinID:CDX71395 | ProteinID:CDX71395.1 | ProteinID:CDY55658.1 | SMART:SM00336 | UniParc:UPI0001E2341B |
| UniProt:A0A078C3G9 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g16300DBnaA01g36590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078C3G9]
Coordinates
chrLK031793:-:444770..445141
Molecular Weight (calculated)
13693.2 Da
IEP (calculated)
6.478
GRAVY (calculated)
-0.209
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRGVNEEEN RSVHGGCRSL CTRPSVPVRC ELCGGDASVF CEADTAFLCR KCDRWVHGAN FLAWRHVRRV LCTACQKLTR KCLVGDNYHV VLPSATAGEA
101: AVEDITIRSE QDSNDDEVPY VFL
101: AVEDITIRSE QDSNDDEVPY VFL
001: MCRGLNNEES RRSDGGGCRS LCTRPSVPVR CELCDGDASV FCEADSAFLC RKCDRWVHGA NFLAWRHVRR VLCTSCQKLT RRCLVGDHDF HVVLPSVTTV
101: GETTVENRSE QDNHEVPFVF L
101: GETTVENRSE QDNHEVPFVF L
Arabidopsis Description
MIP1BBBX31 [Source:UniProtKB/TrEMBL;Acc:A0A178VEW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.