Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28768 | Canola | cytosol, nucleus, plastid | 47.78 | 62.77 |
| CDY42453 | Canola | cytosol | 54.44 | 54.14 |
| AT5G54470.1 | Thale cress | cytosol | 53.89 | 45.12 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 46.67 | 40.38 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 38.33 | 36.9 |
| CDY22930 | Canola | cytosol | 15.0 | 27.84 |
| CDY57233 | Canola | cytosol | 14.44 | 26.8 |
| Zm00001d049464_P001 | Maize | nucleus | 37.78 | 26.05 |
| CDY64254 | Canola | cytosol | 16.11 | 25.89 |
| CDY33149 | Canola | cytosol, nucleus, plastid | 17.22 | 24.8 |
| CDY55658 | Canola | cytosol | 16.67 | 24.39 |
| CDX71395 | Canola | cytosol | 16.67 | 24.39 |
| EES14650 | Sorghum | nucleus | 36.67 | 24.35 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 40.0 | 24.16 |
| Zm00001d024213_P001 | Maize | nucleus | 34.44 | 23.85 |
| GSMUA_Achr11P... | Banana | nucleus | 28.89 | 23.42 |
| Os08t0178800-01 | Rice | nucleus | 35.56 | 22.78 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 40.56 | 20.33 |
| CDY19582 | Canola | cytosol | 21.11 | 17.19 |
| CDY50075 | Canola | nucleus | 20.56 | 16.59 |
| CDX82214 | Canola | cytosol | 21.11 | 16.52 |
| CDY32408 | Canola | cytosol | 20.0 | 16.36 |
Protein Annotations
| EnsemblPlants:CDY18333 | EnsemblPlantsGene:GSBRNA2T00002920001 | GO:A0A078G135 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | ncoils:Coil |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF26 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDY18333 | ProteinID:CDY18333.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0004EED916 | UniProt:A0A078G135 | MapMan:35.2 | : |
Description
BnaC09g30830DBnaC09g30830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G135]
Coordinates
chrLK032084:-:510488..511030
Molecular Weight (calculated)
19574.9 Da
IEP (calculated)
7.538
GRAVY (calculated)
-0.596
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKKCELCD RVARMFCESD QASLCWDCDG KVHGANFLVA KHTRCLLCNV CQSPTPWKAS GLRFGPTVSI CESCLARKNN SVAGSSNQNL KKEINSNNND
101: DCEEGEEEAE KQVVPWGAAP VMSSSSSSVS SGEESFSGDG GLVVKRTRRD MDLDYSDGGD TSLTSSLSLK TAKKRRYLSR
101: DCEEGEEEAE KQVVPWGAAP VMSSSSSSVS SGEESFSGDG GLVVKRTRRD MDLDYSDGGD TSLTSSLSLK TAKKRRYLSR
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.