Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28768 | Canola | cytosol, nucleus, plastid | 31.73 | 48.18 |
| CDY18333 | Canola | nucleus | 40.38 | 46.67 |
| Bra002986.1-P | Field mustard | cytosol | 40.38 | 46.15 |
| CDY42453 | Canola | cytosol | 39.9 | 45.86 |
| KRH25450 | Soybean | cytosol, nucleus, plastid | 36.06 | 43.35 |
| KRH56068 | Soybean | cytosol, nucleus, plastid | 35.1 | 41.24 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 37.02 | 41.18 |
| KRH21598 | Soybean | cytosol, nucleus, plastid | 30.29 | 40.91 |
| Solyc10g006750.2.1 | Tomato | nucleus | 20.19 | 40.38 |
| KRH10724 | Soybean | cytosol, nucleus, plastid | 29.33 | 40.13 |
| Solyc02g079430.2.1 | Tomato | nucleus | 35.1 | 39.46 |
| Bra019058.1-P | Field mustard | cytosol | 38.46 | 39.02 |
| Bra022722.1-P | Field mustard | cytosol, nucleus, plastid | 37.5 | 38.81 |
| PGSC0003DMT400057529 | Potato | nucleus | 34.13 | 37.37 |
| Bra010408.1-P | Field mustard | cytosol, nucleus, plastid | 42.31 | 36.51 |
| AT5G54470.1 | Thale cress | cytosol | 37.5 | 36.28 |
| KRH22488 | Soybean | nucleus | 38.46 | 36.2 |
| Bra026361.1-P | Field mustard | cytosol, nucleus, plastid | 39.9 | 36.09 |
| AT4G27310.1 | Thale cress | cytosol, nucleus, plastid | 37.5 | 34.98 |
| VIT_00s0347g00030.t01 | Wine grape | nucleus | 34.13 | 33.49 |
| KRH26865 | Soybean | nucleus | 35.58 | 33.48 |
| VIT_00s0203g00210.t01 | Wine grape | nucleus | 33.65 | 32.56 |
| Solyc12g005660.1.1 | Tomato | cytosol, nucleus, plastid | 31.25 | 32.18 |
| PGSC0003DMT400035751 | Potato | cytosol, nucleus, plastid | 31.25 | 31.55 |
| PGSC0003DMT400064406 | Potato | nucleus | 35.1 | 31.47 |
| KRH55436 | Soybean | nucleus | 32.21 | 31.02 |
| GSMUA_Achr11P... | Banana | nucleus | 32.69 | 30.63 |
| Zm00001d024213_P001 | Maize | nucleus | 37.5 | 30.0 |
| GSMUA_Achr9P13880_001 | Banana | nucleus | 21.15 | 29.93 |
| EES14650 | Sorghum | nucleus | 38.94 | 29.89 |
| Zm00001d049464_P001 | Maize | nucleus | 37.02 | 29.5 |
| PGSC0003DMT400067337 | Potato | nucleus | 34.13 | 27.63 |
| VIT_12s0134g00400.t01 | Wine grape | nucleus | 38.94 | 27.09 |
| Os08t0178800-01 | Rice | nucleus | 36.54 | 27.05 |
| Solyc07g053140.2.1 | Tomato | cytosol, nucleus, plastid | 33.17 | 26.85 |
| VIT_19s0014g03960.t01 | Wine grape | nucleus | 37.98 | 26.51 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 45.19 | 26.18 |
| GSMUA_Achr6P03790_001 | Banana | nucleus | 21.63 | 20.09 |
| GSMUA_Achr1P10450_001 | Banana | cytosol | 20.19 | 17.57 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 19.23 | 16.33 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 17.79 | 12.54 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P22980_001 | EnsemblPlants:GSMUA_Achr3T22980_001 | EnsemblPlantsGene:GSMUA_Achr3G22980_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF26 | PFAM:PF00643 | SEG:seg | SMART:SM00336 | UniParc:UPI000296D1E1 | UniProt:M0SH14 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative Zinc finger protein CONSTANS-LIKE 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22980_001]
Coordinates
chr3:-:23797099..23797725
Molecular Weight (calculated)
22264.0 Da
IEP (calculated)
3.819
GRAVY (calculated)
-0.833
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKQCELCD RPARMLCESD QASLCWECDA RVHGANFLVA RHTRCLLCRS CQSPTPWRAE GARLGPTVTV CERCAAADGA EDGDGGQGKG SGVDDEGGEG
101: KGEEREVVED DDEEDDGDEG EEDADADEDE GDDDDDEGEN QVVPWSMTPP PVASSSSGEE SGRMGNGGGF LKRMRENVDL GVSQVNQSSS TSLCDLDNMI
201: QEHPFLNI
101: KGEEREVVED DDEEDDGDEG EEDADADEDE GDDDDDEGEN QVVPWSMTPP PVASSSSGEE SGRMGNGGGF LKRMRENVDL GVSQVNQSSS TSLCDLDNMI
201: QEHPFLNI
001: MGKKCDLCNG VARMYCESDQ ASLCWDCDGK VHGANFLVAK HTRCLLCSAC QSLTPWKATG LRLGPTFSVC ESCVALKNAG GGRGNRVLSE NRGQEEVNSF
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
101: ESEEDRIRED HGDGDDAESY DDDEEEDEDE EYSDDEDEDD DEDGDDEEAE NQVVPWSAAA QVPPVMSSSS SDGGSGGSVT KRTRARENSD LLCSDDEIGS
201: SSAQGSNYSR PLKRSAFKST VVV
Arabidopsis Description
BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.